| actionSet | PLMD::PlumedMain | private |
| actionSet_fwd | PLMD::PlumedMain | private |
| activateParseOnlyMode() | PLMD::PlumedMain | |
| active | PLMD::PlumedMain | private |
| backwardPropagate() | PLMD::PlumedMain | |
| bias | PLMD::PlumedMain | private |
| calc() | PLMD::PlumedMain | |
| callErrorHandler(int code, const char *msg) const | PLMD::PlumedMain | inline |
| citations | PLMD::PlumedMain | private |
| citations_fwd | PLMD::PlumedMain | private |
| cite(const std::string &) | PLMD::PlumedMain | |
| cltool | PLMD::PlumedMain | private |
| cmd(std::string_view key, const TypesafePtr &val) override | PLMD::PlumedMain | virtual |
| cmd(const std::string &key, const TypesafePtr &val=nullptr) | PLMD::PlumedMain | inlinevirtual |
| cmd(std::string_view key, const TypesafePtr &val, const std::size_t *shape) | PLMD::PlumedMain | inline |
| cmd(std::string_view key, const TypesafePtr &val, std::initializer_list< SizeLike > shape) | PLMD::PlumedMain | inline |
| cmd(std::string_view key, const TypesafePtr &val, I nelem, const std::size_t *shape=nullptr) | PLMD::PlumedMain | inline |
| cmd(const char *key, const TypesafePtr &val=nullptr) | PLMD::PlumedMain | inline |
| comm | PLMD::PlumedMain | |
| comm_fwd | PLMD::PlumedMain | private |
| datoms | PLMD::PlumedMain | private |
| datoms_fwd | PLMD::PlumedMain | private |
| decreaseReferenceCounter() noexcept | PLMD::PlumedMain | |
| detailedTimers | PLMD::PlumedMain | |
| dlloader | PLMD::PlumedMain | private |
| dlloader_fwd | PLMD::PlumedMain | private |
| doCheckPoint | PLMD::PlumedMain | private |
| doParseOnly | PLMD::PlumedMain | private |
| enableNestedExceptions() | PLMD::PlumedMain | |
| endPlumed | PLMD::PlumedMain | private |
| eraseFile(FileBase &) | PLMD::PlumedMain | |
| error_handler | PLMD::PlumedMain | private |
| exchangePatterns | PLMD::PlumedMain | private |
| exchangePatterns_fwd | PLMD::PlumedMain | private |
| exchangeStep | PLMD::PlumedMain | private |
| exit(int c=0) | PLMD::PlumedMain | |
| fclose(FILE *fp) | PLMD::PlumedMain | |
| fflush() | PLMD::PlumedMain | |
| files | PLMD::PlumedMain | private |
| fopen(const char *path, const char *mode) | PLMD::PlumedMain | |
| getActionSet() const | PLMD::PlumedMain | inline |
| getAtoms() | PLMD::PlumedMain | |
| getBias() const | PLMD::PlumedMain | |
| getCPT() const | PLMD::PlumedMain | inline |
| getEndPlumed() const | PLMD::PlumedMain | inline |
| getExchangePatterns() | PLMD::PlumedMain | inline |
| getExchangeStep() const | PLMD::PlumedMain | inline |
| getGoodNumThreads(const T *x, unsigned s) const | PLMD::PlumedMain | |
| getGoodNumThreads(const std::vector< T > &v) const | PLMD::PlumedMain | |
| getGpuDeviceId() const | PLMD::PlumedMain | inline |
| getKeywordsForAction(const std::string &action, Keywords &keys) const | PLMD::PlumedMain | |
| getLog() | PLMD::PlumedMain | |
| getNestedExceptions() const | PLMD::PlumedMain | inline |
| getNumThreads() const | PLMD::PlumedMain | |
| getRealPrecision() const | PLMD::PlumedMain | |
| getRestart() const | PLMD::PlumedMain | inline |
| getStep() const | PLMD::PlumedMain | inline |
| getSuffix() const | PLMD::PlumedMain | inline |
| getUnits() | PLMD::PlumedMain | |
| getWork() const | PLMD::PlumedMain | |
| gpuDeviceId | PLMD::PlumedMain | |
| grex | PLMD::PlumedMain | private |
| hasBeenInitialized() const | PLMD::PlumedMain | inline |
| increaseReferenceCounter() noexcept | PLMD::PlumedMain | |
| init() | PLMD::PlumedMain | |
| initialized | PLMD::PlumedMain | private |
| inputs | PLMD::PlumedMain | private |
| inputsAreActive() const | PLMD::PlumedMain | |
| insertFile(FileBase &) | PLMD::PlumedMain | |
| justApply() | PLMD::PlumedMain | |
| justCalculate() | PLMD::PlumedMain | |
| load(const std::string &) | PLMD::PlumedMain | |
| log | PLMD::PlumedMain | private |
| log_fwd | PLMD::PlumedMain | private |
| MDEngine | PLMD::PlumedMain | private |
| MDQuantityToPLUMED(const std::string &unit, const TypesafePtr &m) const | PLMD::PlumedMain | |
| multi_sim_comm | PLMD::PlumedMain | |
| multi_sim_comm_fwd | PLMD::PlumedMain | private |
| name_of_energy | PLMD::PlumedMain | private |
| nestedExceptions | PLMD::PlumedMain | private |
| novirial | PLMD::PlumedMain | |
| parseOnlyMode() const | PLMD::PlumedMain | |
| passMap | PLMD::PlumedMain | |
| passtools | PLMD::PlumedMain | private |
| performCalc() | PLMD::PlumedMain | |
| performCalcNoForces() | PLMD::PlumedMain | |
| performCalcNoUpdate() | PLMD::PlumedMain | |
| pilots | PLMD::PlumedMain | private |
| plumedDat | PLMD::PlumedMain | private |
| PlumedMain() | PLMD::PlumedMain | |
| plumedQuantityToMD(const std::string &unit, const double &eng, const TypesafePtr &m) const | PLMD::PlumedMain | |
| prepareCalc() | PLMD::PlumedMain | |
| prepareDependencies() | PLMD::PlumedMain | |
| readBinary(std::istream &) | PLMD::PlumedMain | |
| readInputFile(const std::string &str) | PLMD::PlumedMain | |
| readInputFile(IFile &ifile) | PLMD::PlumedMain | |
| readInputLine(const std::string &str, const bool &before_init=false) | PLMD::PlumedMain | |
| readInputLines(const std::string &str) | PLMD::PlumedMain | |
| readInputWords(const std::vector< std::string > &str, const bool &before_init) | PLMD::PlumedMain | |
| referenceCounter | PLMD::PlumedMain | private |
| resetActive(bool active) | PLMD::PlumedMain | inline |
| resetInputs() | PLMD::PlumedMain | |
| restart | PLMD::PlumedMain | private |
| runJobsAtEndOfCalculation() | PLMD::PlumedMain | |
| setEndPlumed() | PLMD::PlumedMain | inline |
| setEnergyValue(const std::string &name) | PLMD::PlumedMain | |
| setExchangeStep(bool f) | PLMD::PlumedMain | inline |
| setInputForce(const std::string &name, const TypesafePtr &val) | PLMD::PlumedMain | |
| setInputValue(const std::string &name, const unsigned &start, const unsigned &stride, const TypesafePtr &val) | PLMD::PlumedMain | |
| setRestart(bool f) | PLMD::PlumedMain | inline |
| setSuffix(const std::string &) | PLMD::PlumedMain | inline |
| setUnits(const bool &natural, const Units &u) | PLMD::PlumedMain | |
| setupInterfaceActions() | PLMD::PlumedMain | private |
| shareAll() | PLMD::PlumedMain | |
| shareData() | PLMD::PlumedMain | |
| startStep() | PLMD::PlumedMain | private |
| step | PLMD::PlumedMain | private |
| stop() | PLMD::PlumedMain | |
| stopFlag | PLMD::PlumedMain | |
| stopFlag_fwd | PLMD::PlumedMain | private |
| stopNow | PLMD::PlumedMain | |
| stopwatch | PLMD::PlumedMain | private |
| stopwatch_fwd | PLMD::PlumedMain | private |
| suffix | PLMD::PlumedMain | private |
| update() | PLMD::PlumedMain | |
| updateFlags | PLMD::PlumedMain | |
| updateFlagsPop() | PLMD::PlumedMain | inline |
| updateFlagsPush(bool) | PLMD::PlumedMain | inline |
| updateFlagsTop() | PLMD::PlumedMain | inline |
| useCountReferenceCounter() const noexcept | PLMD::PlumedMain | |
| usingNaturalUnits() const | PLMD::PlumedMain | |
| valueExists(const std::string &name) const | PLMD::PlumedMain | |
| waitData() | PLMD::PlumedMain | |
| work | PLMD::PlumedMain | private |
| writeBinary(std::ostream &) const | PLMD::PlumedMain | |
| ~PlumedMain() | PLMD::PlumedMain | |
| ~WithCmd() | PLMD::WithCmd | inlinevirtual |
1.13.2