This is the complete list of members for PLMD::RMSDCoreData, including all inherited members.
alEqDis | PLMD::RMSDCoreData | private |
align | PLMD::RMSDCoreData | private |
calcPositionsCenter() | PLMD::RMSDCoreData | inline |
calcReferenceCenter() | PLMD::RMSDCoreData | inline |
cpositions | PLMD::RMSDCoreData | private |
cpositions_is_calculated | PLMD::RMSDCoreData | private |
cpositions_is_removed | PLMD::RMSDCoreData | private |
creference | PLMD::RMSDCoreData | private |
creference_is_calculated | PLMD::RMSDCoreData | private |
creference_is_removed | PLMD::RMSDCoreData | private |
d | PLMD::RMSDCoreData | private |
ddist_drotation | PLMD::RMSDCoreData | private |
ddist_drr01 | PLMD::RMSDCoreData | private |
displace | PLMD::RMSDCoreData | private |
dist | PLMD::RMSDCoreData | private |
distanceIsMSD | PLMD::RMSDCoreData | private |
doCoreCalc(bool safe, bool alEqDis, bool only_rotation=false) | PLMD::RMSDCoreData | |
doCoreCalcWithCloseStructure(bool safe, bool alEqDis, const Tensor &rotationPosClose, const Tensor &rotationRefClose, std::array< std::array< Tensor, 3 >, 3 > &drotationPosCloseDrr01) | PLMD::RMSDCoreData | |
drotation_drr01 | PLMD::RMSDCoreData | private |
eigenvals | PLMD::RMSDCoreData | private |
eigenvecs | PLMD::RMSDCoreData | private |
getAlignedPositionsToReference() | PLMD::RMSDCoreData | |
getAlignedReferenceToPositions() | PLMD::RMSDCoreData | |
getCenteredPositions() | PLMD::RMSDCoreData | |
getCenteredReference() | PLMD::RMSDCoreData | |
getDDistanceDPositions() | PLMD::RMSDCoreData | |
getDDistanceDReference() | PLMD::RMSDCoreData | |
getDDistanceDReferenceSOMA() | PLMD::RMSDCoreData | |
getDistance(bool squared) | PLMD::RMSDCoreData | |
getDRotationDPositions(bool inverseTransform=false) | PLMD::RMSDCoreData | |
getDRotationDReference(bool inverseTransform=false) | PLMD::RMSDCoreData | |
getDRotationDRr01() const | PLMD::RMSDCoreData | |
getPositionsCenter() | PLMD::RMSDCoreData | |
getPositionsCenterIsRemoved() | PLMD::RMSDCoreData | inline |
getReferenceCenter() | PLMD::RMSDCoreData | |
getReferenceCenterIsRemoved() | PLMD::RMSDCoreData | inline |
getRotationMatrixPositionsToReference() | PLMD::RMSDCoreData | |
getRotationMatrixReferenceToPositions() | PLMD::RMSDCoreData | |
hasDistance | PLMD::RMSDCoreData | private |
isInitialized | PLMD::RMSDCoreData | private |
positions | PLMD::RMSDCoreData | private |
reference | PLMD::RMSDCoreData | private |
retrieve_only_rotation | PLMD::RMSDCoreData | private |
RMSDCoreData(const std::vector< double > &a, const std::vector< double > &d, const std::vector< Vector > &p, const std::vector< Vector > &r, Vector &cp, Vector &cr) | PLMD::RMSDCoreData | inline |
RMSDCoreData(const std::vector< double > &a, const std::vector< double > &d, const std::vector< Vector > &p, const std::vector< Vector > &r) | PLMD::RMSDCoreData | inline |
rotation | PLMD::RMSDCoreData | private |
rr00 | PLMD::RMSDCoreData | private |
rr11 | PLMD::RMSDCoreData | private |
safe | PLMD::RMSDCoreData | private |
setPositionsCenter(Vector v) | PLMD::RMSDCoreData | inline |
setPositionsCenterIsRemoved(bool t) | PLMD::RMSDCoreData | inline |
setReferenceCenter(Vector v) | PLMD::RMSDCoreData | inline |
setReferenceCenterIsRemoved(bool t) | PLMD::RMSDCoreData | inline |