| Action(const ActionOptions &) | PLMD::Action | explicit |
| ActionShortcut(const ActionOptions &ao) | PLMD::ActionShortcut | explicit |
| activate() | PLMD::Action | virtual |
| addCommentToShortcutOutput(const std::string &input) | PLMD::ActionShortcut | |
| addDependency(Action *) | PLMD::Action | |
| addToSavedInputLines(const std::string &line) | PLMD::ActionShortcut | private |
| apply() override | PLMD::ActionShortcut | inlinevirtual |
| beforeUpdate() | PLMD::Action | inlinevirtual |
| calculate() override | PLMD::ActionShortcut | inlinevirtual |
| calculateFromPDB(const PDB &) | PLMD::Action | |
| calculateNumericalDerivatives(ActionWithValue *a=NULL) | PLMD::Action | virtual |
| castToActionAtomistic() noexcept | PLMD::Action | inlinevirtual |
| castToActionForInterface() noexcept | PLMD::Action | inlinevirtual |
| castToActionShortcut() noexcept final | PLMD::ActionShortcut | inlinevirtual |
| castToActionToGetData() noexcept | PLMD::Action | inlinevirtual |
| castToActionToPutData() noexcept | PLMD::Action | inlinevirtual |
| castToActionWithArguments() noexcept | PLMD::Action | inlinevirtual |
| castToActionWithValue() noexcept | PLMD::Action | inlinevirtual |
| castToActionWithVirtualAtom() noexcept | PLMD::Action | inlinevirtual |
| castToDomainDecomposition() noexcept | PLMD::Action | inlinevirtual |
| castToPbcAction() noexcept | PLMD::Action | inlinevirtual |
| checkForDependency(Action *) | PLMD::Action | |
| checkNeedsGradients() const | PLMD::Action | inlinevirtual |
| checkNumericalDerivatives() const | PLMD::Action | inlinevirtual |
| checkRead() | PLMD::Action | |
| checkUpdate() const | PLMD::Action | |
| cite(const std::string &s) | PLMD::Action | |
| clearDependencies() | PLMD::Action | |
| clearOptions() | PLMD::Action | virtual |
| comm | PLMD::Action | |
| convertInputLineToString() | PLMD::ActionShortcut | |
| deactivate() | PLMD::Action | inlinevirtual |
| Dependencies typedef | PLMD::Action | |
| error(const std::string &msg) const | PLMD::Action | |
| exit(int c=0) | PLMD::Action | |
| fclose(FILE *fp) | PLMD::Action | |
| fflush() | PLMD::Action | |
| files | PLMD::Action | |
| fopen(const char *path, const char *mode) | PLMD::Action | |
| getCPT() const | PLMD::Action | |
| getDefaultString() const | PLMD::Action | inline |
| getDependencies() const | PLMD::Action | inline |
| getExchangeStep() const | PLMD::Action | |
| getKBoltzmann() const | PLMD::Action | protected |
| getkBT() | PLMD::Action | |
| getKeyword(const std::string &key) | PLMD::Action | |
| getLabel() const | PLMD::Action | inline |
| getName() const | PLMD::Action | inline |
| getRestart() const | PLMD::Action | inline |
| getSavedInputLines() const | PLMD::ActionShortcut | |
| getSavedOutputs() const | PLMD::ActionShortcut | |
| getShortcutLabel() const | PLMD::ActionShortcut | |
| getStep() const | PLMD::Action | |
| getTime() const | PLMD::Action | |
| getTimeStep() const | PLMD::Action | |
| getUnits() const | PLMD::Action | protected |
| getUpdateLimits() const | PLMD::ActionShortcut | protected |
| interpretDataLabel(const std::string &mystr, Action *myuser, std::vector< Value * > &args) const | PLMD::ActionShortcut | |
| isActive() const | PLMD::Action | inline |
| isOptionOn(const std::string &s) const | PLMD::Action | inline |
| keywords | PLMD::Action | |
| lockRequests() | PLMD::Action | inlinevirtual |
| log | PLMD::Action | |
| multi_sim_comm | PLMD::Action | |
| Ones(const ActionOptions &) | PLMD::generic::Ones | explicit |
| parse(const std::string &key, T &t) | PLMD::Action | |
| parseFlag(const std::string &key, bool &t) | PLMD::Action | |
| parseNumbered(const std::string &key, const int no, T &t) | PLMD::Action | |
| parseNumberedVector(const std::string &key, const int no, std::vector< T > &t) | PLMD::Action | |
| parseVector(const std::string &key, std::vector< T > &t) | PLMD::Action | |
| plumed | PLMD::Action | |
| prepare() | PLMD::Action | virtual |
| readAtomsFromPDB(const PDB &) | PLMD::Action | inlinevirtual |
| readInputLine(const std::string &input, bool saveline=true) | PLMD::ActionShortcut | |
| readShortcutKeywords(const Keywords &keys, std::map< std::string, std::string > &keymap) | PLMD::ActionShortcut | |
| registerKeywords(Keywords &keys) | PLMD::generic::Ones | static |
| resetStoredTimestep() | PLMD::Action | |
| runFinalJobs() | PLMD::Action | inlinevirtual |
| savedInputLines | PLMD::ActionShortcut | private |
| savedOutputs | PLMD::ActionShortcut | private |
| setOption(const std::string &s) | PLMD::Action | virtual |
| setupConstantValues(const bool &have_atoms) | PLMD::Action | |
| shortcutlabel | PLMD::ActionShortcut | private |
| unlockRequests() | PLMD::Action | inlinevirtual |
| update() | PLMD::Action | inlinevirtual |
| usingNaturalUnits() const | PLMD::Action | protected |
| warning(const std::string &msg) | PLMD::Action | |
| writeInGraph() const | PLMD::Action | virtual |
| ~Action() | PLMD::Action | virtual |