PLMD::mapping::PathReparameterization Member List

This is the complete list of members for PLMD::mapping::PathReparameterization, including all inherited members.

Action(const ActionOptions &)	PLMD::Action	explicit
Action(const Action &a)=delete	PLMD::Action	private
ActionPilot(const ActionOptions &)	PLMD::ActionPilot	explicit
activate()	PLMD::Action	virtual
active	PLMD::Action	private
addDependency(Action *)	PLMD::Action
after	PLMD::Action	private
apply()	PLMD::mapping::PathReparameterization	inlinevirtual
beforeUpdate()	PLMD::Action	inlinevirtual
calcCurrentPathSpacings(const int &istart, const int &iend)	PLMD::mapping::PathReparameterization	private
calculate()	PLMD::mapping::PathReparameterization	inlinevirtual
calculateFromPDB(const PDB &)	PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::Action	virtual
castToActionAtomistic() noexcept	PLMD::Action	inlinevirtual
castToActionForInterface() noexcept	PLMD::Action	inlinevirtual
castToActionShortcut() noexcept	PLMD::Action	inlinevirtual
castToActionToGetData() noexcept	PLMD::Action	inlinevirtual
castToActionToPutData() noexcept	PLMD::Action	inlinevirtual
castToActionWithArguments() noexcept	PLMD::Action	inlinevirtual
castToActionWithValue() noexcept	PLMD::Action	inlinevirtual
castToActionWithVirtualAtom() noexcept	PLMD::Action	inlinevirtual
castToDomainDecomposition() noexcept	PLMD::Action	inlinevirtual
castToPbcAction() noexcept	PLMD::Action	inlinevirtual
checkForDependency(Action *)	PLMD::Action
checkNeedsGradients() const	PLMD::Action	inlinevirtual
checkNumericalDerivatives() const	PLMD::Action	inlinevirtual
checkRead()	PLMD::Action
checkUpdate() const	PLMD::Action
cite(const std::string &s)	PLMD::Action
clearDependencies()	PLMD::Action
clearOptions()	PLMD::Action	virtual
comm	PLMD::Action
computeSpacing(const unsigned &ifrom, const unsigned &ito)	PLMD::mapping::PathReparameterization	private
data	PLMD::mapping::PathReparameterization	private
deactivate()	PLMD::Action	inlinevirtual
defaults	PLMD::Action	private
Dependencies typedef	PLMD::Action
displace_value	PLMD::mapping::PathReparameterization	private
doCheckPoint	PLMD::Action	private
error(const std::string &msg) const	PLMD::Action
exit(int c=0)	PLMD::Action
fclose(FILE *fp)	PLMD::Action
fflush()	PLMD::Action
files	PLMD::Action
fopen(const char *path, const char *mode)	PLMD::Action
getCPT() const	PLMD::Action
getDefaultString() const	PLMD::Action	inline
getDependencies() const	PLMD::Action	inline
getExchangeStep() const	PLMD::Action
getKBoltzmann() const	PLMD::Action	protected
getkBT()	PLMD::Action
getKeyword(const std::string &key)	PLMD::Action
getLabel() const	PLMD::Action	inline
getName() const	PLMD::Action	inline
getRestart() const	PLMD::Action	inline
getStep() const	PLMD::Action
getStride() const	PLMD::ActionPilot
getTime() const	PLMD::Action
getTimeStep() const	PLMD::Action
getUnits() const	PLMD::Action	protected
ifix1	PLMD::mapping::PathReparameterization	private
ifix2	PLMD::mapping::PathReparameterization	private
isActive() const	PLMD::Action	inline
isOptionOn(const std::string &s) const	PLMD::Action	inline
keywords	PLMD::Action
label	PLMD::Action	private
len	PLMD::mapping::PathReparameterization	private
line	PLMD::Action	private
lockRequests()	PLMD::Action	inlinevirtual
log	PLMD::Action
loopEnd(const int &index, const int &end, const int &inc) const	PLMD::mapping::PathReparameterization	private
maxcycles	PLMD::mapping::PathReparameterization	private
multi_sim_comm	PLMD::Action
name	PLMD::Action	private
never_activate	PLMD::Action	private
onStep() const	PLMD::ActionPilot	virtual
operator=(const Action &a)=delete	PLMD::Action	private
options	PLMD::Action	private
parse(const std::string &key, T &t)	PLMD::Action
parseFlag(const std::string &key, bool &t)	PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)	PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)	PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)	PLMD::Action
path_projector	PLMD::mapping::PathReparameterization	private
PathReparameterization(const ActionOptions &)	PLMD::mapping::PathReparameterization
plumed	PLMD::Action
prepare()	PLMD::Action	virtual
readAtomsFromPDB(const PDB &)	PLMD::Action	inlinevirtual
registerKeywords(Keywords &keys)	PLMD::mapping::PathReparameterization	static
reparameterizePart(const int &istart, const int &iend, const double &target)	PLMD::mapping::PathReparameterization	private
replica_index	PLMD::Action	private
restart	PLMD::Action	private
runFinalJobs()	PLMD::Action	inlinevirtual
setOption(const std::string &s)	PLMD::Action	virtual
setStride(const int &n)	PLMD::ActionPilot
setupConstantValues(const bool &have_atoms)	PLMD::Action
sfrac	PLMD::mapping::PathReparameterization	private
stride	PLMD::ActionPilot	private
sumlen	PLMD::mapping::PathReparameterization	private
timestep	PLMD::Action	private
TOL	PLMD::mapping::PathReparameterization	private
unlockRequests()	PLMD::Action	inlinevirtual
update()	PLMD::mapping::PathReparameterization	virtual
update_from	PLMD::Action	private
update_until	PLMD::Action	private
usingNaturalUnits() const	PLMD::Action	protected
warning(const std::string &msg)	PLMD::Action
writeInGraph() const	PLMD::Action	virtual
~Action()	PLMD::Action	virtual