action_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
args_pntrs_ | PLMD::ves::LinearBasisSetExpansion | private |
basisf_pntrs_ | PLMD::ves::LinearBasisSetExpansion | private |
beta() const | PLMD::ves::LinearBasisSetExpansion | inline |
beta_ | PLMD::ves::LinearBasisSetExpansion | private |
bias_coeffs_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
bias_grid_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
bias_withoutcutoff_grid_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
BiasCoeffs() const | PLMD::ves::LinearBasisSetExpansion | inline |
biasCutoffActive() const | PLMD::ves::LinearBasisSetExpansion | |
calculateReweightFactor() const | PLMD::ves::LinearBasisSetExpansion | |
calculateTargetDistAveragesFromGrid(const Grid *) | PLMD::ves::LinearBasisSetExpansion | private |
fes_grid_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
getBasisSetConstant() | PLMD::ves::LinearBasisSetExpansion | inline |
getBasisSetValue(const std::vector< double > &, const size_t, std::vector< BasisFunctions * > &, CoeffsVector *) | PLMD::ves::LinearBasisSetExpansion | static |
getBasisSetValue(const std::vector< double > &, const size_t) | PLMD::ves::LinearBasisSetExpansion | inline |
getBasisSetValues(const std::vector< double > &, std::vector< double > &, std::vector< BasisFunctions * > &, CoeffsVector *, Communicator *comm_in=NULL) | PLMD::ves::LinearBasisSetExpansion | static |
getBasisSetValues(const std::vector< double > &, std::vector< double > &, const bool parallel=true) | PLMD::ves::LinearBasisSetExpansion | inline |
getBeta() const | PLMD::ves::LinearBasisSetExpansion | inline |
getBias(const std::vector< double > &, bool &, const bool parallel=true) | PLMD::ves::LinearBasisSetExpansion | inline |
getBiasAndForces(const std::vector< double > &, bool &, std::vector< double > &, std::vector< double > &, std::vector< BasisFunctions * > &, CoeffsVector *, Communicator *comm_in=NULL) | PLMD::ves::LinearBasisSetExpansion | static |
getBiasAndForces(const std::vector< double > &, bool &, std::vector< double > &, std::vector< double > &) | PLMD::ves::LinearBasisSetExpansion | inline |
getBiasAndForces(const std::vector< double > &, bool &, std::vector< double > &) | PLMD::ves::LinearBasisSetExpansion | inline |
getGridBins() const | PLMD::ves::LinearBasisSetExpansion | inline |
getKbT() const | PLMD::ves::LinearBasisSetExpansion | inline |
getNumberOfArguments() const | PLMD::ves::LinearBasisSetExpansion | inline |
getNumberOfBasisFunctions() const | PLMD::ves::LinearBasisSetExpansion | inline |
getNumberOfCoeffs() const | PLMD::ves::LinearBasisSetExpansion | inline |
getPntrsToArguments() const | PLMD::ves::LinearBasisSetExpansion | inline |
getPntrsToBasisFunctions() const | PLMD::ves::LinearBasisSetExpansion | inline |
getPntrToBiasCoeffs() const | PLMD::ves::LinearBasisSetExpansion | inline |
getPntrToBiasGrid() const | PLMD::ves::LinearBasisSetExpansion | inline |
getStepOfLastBiasGridUpdate() const | PLMD::ves::LinearBasisSetExpansion | inline |
getStepOfLastBiasWithoutCutoffGridUpdate() const | PLMD::ves::LinearBasisSetExpansion | inline |
getStepOfLastFesGridUpdate() const | PLMD::ves::LinearBasisSetExpansion | inline |
grid_bins_ | PLMD::ves::LinearBasisSetExpansion | private |
grid_max_ | PLMD::ves::LinearBasisSetExpansion | private |
grid_min_ | PLMD::ves::LinearBasisSetExpansion | private |
isStaticTargetDistFileOutputActive() const | PLMD::ves::LinearBasisSetExpansion | private |
kBT() const | PLMD::ves::LinearBasisSetExpansion | inline |
kbt_ | PLMD::ves::LinearBasisSetExpansion | private |
label_ | PLMD::ves::LinearBasisSetExpansion | private |
LinearBasisSetExpansion(const std::string &, const double, Communicator &, const std::vector< Value * > &, std::vector< BasisFunctions * > &, CoeffsVector *bias_coeffs_pntr_in=NULL) | PLMD::ves::LinearBasisSetExpansion | explicit |
LinearBasisSetExpansion(const LinearBasisSetExpansion &) | PLMD::ves::LinearBasisSetExpansion | explicitprivate |
linkAction(Action *) | PLMD::ves::LinearBasisSetExpansion | |
linkVesBias(VesBias *) | PLMD::ves::LinearBasisSetExpansion | |
log_targetdist_grid_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
mycomm_ | PLMD::ves::LinearBasisSetExpansion | private |
nargs_ | PLMD::ves::LinearBasisSetExpansion | private |
nbasisf_ | PLMD::ves::LinearBasisSetExpansion | private |
ncoeffs_ | PLMD::ves::LinearBasisSetExpansion | private |
operator=(const LinearBasisSetExpansion &)=delete | PLMD::ves::LinearBasisSetExpansion | private |
readInRestartTargetDistribution(const std::string &) | PLMD::ves::LinearBasisSetExpansion | |
registerKeywords(Keywords &keys) | PLMD::ves::LinearBasisSetExpansion | static |
resetStepOfLastBiasGridUpdate() | PLMD::ves::LinearBasisSetExpansion | inline |
resetStepOfLastBiasWithoutCutoffGridUpdate() | PLMD::ves::LinearBasisSetExpansion | inline |
resetStepOfLastFesGridUpdate() | PLMD::ves::LinearBasisSetExpansion | inline |
restartTargetDistribution() | PLMD::ves::LinearBasisSetExpansion | |
serial_ | PLMD::ves::LinearBasisSetExpansion | private |
setBiasMaximumToZero() | PLMD::ves::LinearBasisSetExpansion | |
setBiasMinimumToZero() | PLMD::ves::LinearBasisSetExpansion | |
setGridBins(const std::vector< unsigned int > &) | PLMD::ves::LinearBasisSetExpansion | |
setGridBins(const unsigned int) | PLMD::ves::LinearBasisSetExpansion | |
setParallel() | PLMD::ves::LinearBasisSetExpansion | inline |
setSerial() | PLMD::ves::LinearBasisSetExpansion | inline |
setStepOfLastBiasGridUpdate(long long int step) | PLMD::ves::LinearBasisSetExpansion | inline |
setStepOfLastBiasWithoutCutoffGridUpdate(long long int step) | PLMD::ves::LinearBasisSetExpansion | inline |
setStepOfLastFesGridUpdate(long long int step) | PLMD::ves::LinearBasisSetExpansion | inline |
setupBiasGrid(const bool usederiv=false) | PLMD::ves::LinearBasisSetExpansion | |
setupFesGrid() | PLMD::ves::LinearBasisSetExpansion | |
setupFesProjGrid() | PLMD::ves::LinearBasisSetExpansion | |
setupGeneralGrid(const std::string &, const bool usederiv=false) | PLMD::ves::LinearBasisSetExpansion | private |
setupTargetDistribution(TargetDistribution *) | PLMD::ves::LinearBasisSetExpansion | |
setupUniformTargetDistribution() | PLMD::ves::LinearBasisSetExpansion | |
step_of_last_biasgrid_update | PLMD::ves::LinearBasisSetExpansion | private |
step_of_last_biaswithoutcutoffgrid_update | PLMD::ves::LinearBasisSetExpansion | private |
step_of_last_fesgrid_update | PLMD::ves::LinearBasisSetExpansion | private |
targetdist_averages_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
targetdist_grid_label_ | PLMD::ves::LinearBasisSetExpansion | private |
targetdist_grid_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
targetdist_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
TargetDistAverages() const | PLMD::ves::LinearBasisSetExpansion | inline |
updateBiasGrid() | PLMD::ves::LinearBasisSetExpansion | |
updateBiasWithoutCutoffGrid() | PLMD::ves::LinearBasisSetExpansion | |
updateFesGrid() | PLMD::ves::LinearBasisSetExpansion | |
updateTargetDistribution() | PLMD::ves::LinearBasisSetExpansion | |
vesbias_pntr_ | PLMD::ves::LinearBasisSetExpansion | private |
writeBiasGridToFile(OFile &, const bool append=false) const | PLMD::ves::LinearBasisSetExpansion | |
writeBiasWithoutCutoffGridToFile(OFile &, const bool append=false) const | PLMD::ves::LinearBasisSetExpansion | |
writeFesGridToFile(OFile &, const bool append=false) const | PLMD::ves::LinearBasisSetExpansion | |
writeFesProjGridToFile(const std::vector< std::string > &, OFile &, const bool append=false) const | PLMD::ves::LinearBasisSetExpansion | |
writeLogTargetDistGridToFile(OFile &, const bool append=false) const | PLMD::ves::LinearBasisSetExpansion | |
writeTargetDistGridToFile(OFile &, const bool append=false) const | PLMD::ves::LinearBasisSetExpansion | |
writeTargetDistProjGridToFile(const std::vector< std::string > &, OFile &, const bool append=false) const | PLMD::ves::LinearBasisSetExpansion | |
writeTargetDistributionToFile(const std::string &) const | PLMD::ves::LinearBasisSetExpansion | |
~LinearBasisSetExpansion() | PLMD::ves::LinearBasisSetExpansion | |