CALIBER.md working 1.dat.plumed.stderr
Stderr for source: CALIBER.md_working_1.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): ********** STACK DUMP ********** /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD9ExceptionC1Ev+0x22b) [0x7f424f5d7a6b] /home/runner/opt/lib/libplumedKernel.so(+0x3c4a61) [0x7f424e9c4a61] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_14GenericMolInfoEE6createERKNS_13ActionOptionsE+0x27) [0x7f424f085d77] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7f424ee0c573] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7f424ee9203a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD7cltools6DriverIdE4mainEP8_IO_FILES4_RNS_12CommunicatorE+0x6574) [0x7f424eb79804] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3runEiPPcP8_IO_FILES4_RNS_12CommunicatorE+0x72a) [0x7f424ee49b4a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x54e) [0x7f424ee4c62e] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x12f4) [0x7f424ee9a4f4] /home/runner/opt/lib/libplumedKernel.so(+0x8a3c31) [0x7f424eea3c31] plumed(+0x1e1e7) [0x55b5453d61e7] plumed(+0x14d41) [0x55b5453ccd41] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f424de29d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f424de29e40] plumed(+0x14eb5) [0x55b5453cceb5] ********** END STACK DUMP ********** (core/GenericMolInfo.cpp:93) PLMD::GenericMolInfo::GenericMolInfo(const PLMD::ActionOptions&) missing input file first.pdb [runnervmyg876:45204] *** Process received signal *** [runnervmyg876:45204] Signal: Aborted (6) [runnervmyg876:45204] Signal code: (-6) [runnervmyg876:45204] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f424de42520] [runnervmyg876:45204] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f424de969fc] [runnervmyg876:45204] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f424de42476] [runnervmyg876:45204] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f424de287f3] [runnervmyg876:45204] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f424e2a2b9e] [runnervmyg876:45204] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f424e2ae20c] [runnervmyg876:45204] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f424e2ae277] [runnervmyg876:45204] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f424e2ae52b] [runnervmyg876:45204] [ 8] plumed(+0x14254)[0x55b5453cc254] [runnervmyg876:45204] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f424de29d90] [runnervmyg876:45204] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f424de29e40] [runnervmyg876:45204] [11] plumed(+0x14eb5)[0x55b5453cceb5] [runnervmyg876:45204] *** End of error message ***