PLUMED: PLUMED is starting
PLUMED: Version: 2.11.0-dev (git: 5a355ea) compiled on Sep  9 2026 at 16:41:42
PLUMED: Please cite these papers when using PLUMED [1][2]
PLUMED: For further information see the PLUMED web page at http://www.plumed.org
PLUMED: Root: /home/runner/opt/lib/plumed
PLUMED: LibraryPath: /home/runner/opt/lib/libplumedKernel.so
PLUMED: For installed feature, see /home/runner/opt/lib/plumed/src/config/config.txt
PLUMED: Molecular dynamics engine: driver
PLUMED: Precision of reals: 8
PLUMED: Running over 1 node
PLUMED: Number of threads: 2
PLUMED: Cache line size: 512
PLUMED: Number of atoms: 100000
PLUMED: File suffix: 
PLUMED: Timestep: 1.000000
PLUMED: KbT: 2.490000
PLUMED: Relevant bibliography:
PLUMED:   [1] The PLUMED consortium, Nat. Methods 16, 670 (2019)
PLUMED:   [2] Tribello, Bonomi, Branduardi, Camilloni, and Bussi, Comput. Phys. Commun. 185, 604 (2014)
PLUMED: Please read and cite where appropriate!
PLUMED: Finished setup
PLUMED: Action KENREF
PLUMED:   with label kenref
PLUMED:   added component to this action: kenref.bias 
regtest/kenref/rt-kenref-sigma/1-1_atom_pairs.csv
PLUMED:   added component to this action: kenref.energy 
PLUMED:   added component to this action: kenref.rmsd 
  KEnRef bias  model=SIGMA  k=1  n=0.25
  15 guide atoms, 32 restrained atoms
PLUMED: Action PRINT
PLUMED:   with label @1
PLUMED:   with stride 1
PLUMED:   with arguments : 
PLUMED:    scalar with label kenref.bias 
PLUMED:    scalar with label kenref.energy 
PLUMED:    scalar with label kenref.rmsd 
PLUMED:   on file colvar
PLUMED:   with format  %f
PLUMED:                                               Cycles        Total      Average      Minimum      Maximum
PLUMED:                                                    1     0.010102     0.010102     0.010102     0.010102
