METATOMIC.md working 1.dat.plumed.stderr

Stderr for source: METATOMIC.md_working_1.dat
Download: zipped raw stdout - zipped raw stderr

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terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError'
what():

********** STACK DUMP **********
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD9ExceptionC1Ev+0x22b) [0x7f1a29f39fbb]
/home/runner/opt/lib/libplumedKernel.so(_ZNK4PLMD6Action5errorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x7b) [0x7f1a296eba2b]
/home/runner/opt/lib/libplumedKernel.so(+0x7414dd) [0x7f1a293414dd]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_9metatomic21MetatomicPlumedActionEE6createERKNS_13ActionOptionsE+0x27) [0x7f1a29cfb407]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7f1a296f96d3]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7f1a2978004a]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD7cltools6DriverIdE4mainEP8_IO_FILES4_RNS_12CommunicatorE+0x6574) [0x7f1a294471a4]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3runEiPPcP8_IO_FILES4_RNS_12CommunicatorE+0x72a) [0x7f1a2973777a]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x54e) [0x7f1a2973a25e]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x12f4) [0x7f1a29788544]
/home/runner/opt/lib/libplumedKernel.so(+0xb91a41) [0x7f1a29791a41]
plumed(+0x1e1e7) [0x5639e678a1e7]
plumed(+0x14d41) [0x5639e6780d41]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f1a28429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f1a28429e40]
plumed(+0x14eb5) [0x5639e6780eb5]

********** END STACK DUMP **********

(core/Action.cpp:372) void PLMD::Action::error(const string&) const
ERROR in input to action METATOMIC with label metatomic_cv : failed to load model at 'custom_cv.pt': open file failed because of errno 2 on fopen: No such file or directory, file path: custom_cv.pt
Exception raised from RAIIFile at /pytorch/caffe2/serialize/file_adapter.cc:24 (most recent call first):
frame #0: c10::Error::Error(c10::SourceLocation, std::__cxx11::basic_string, std::allocator >) + 0x9d (0x7f1a1097ea9d in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libc10.so)
frame #1: c10::detail::torchCheckFail(char const*, char const*, unsigned int, std::__cxx11::basic_string, std::allocator > const&) + 0xca (0x7f1a1090ce61 in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libc10.so)
frame #2: caffe2::serialize::FileAdapter::RAIIFile::RAIIFile(std::__cxx11::basic_string, std::allocator > const&) + 0xfd (0x7f1a159b7e9d in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libtorch_cpu.so)
frame #3: caffe2::serialize::FileAdapter::FileAdapter(std::__cxx11::basic_string, std::allocator > const&) + 0x2e (0x7f1a159b7eee in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libtorch_cpu.so)
frame #4: caffe2::serialize::PyTorchStreamReader::PyTorchStreamReader(std::__cxx11::basic_string, std::allocator > const&) + 0x6d (0x7f1a159b6e9d in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libtorch_cpu.so)
frame #5: metatomic_torch::load_model_extensions(std::__cxx11::basic_string, std::allocator >, std::optional, std::allocator > >) + 0x45 (0x7f1a2871a955 in /home/runner/.local/lib/python3.10/site-packages/metatomic/torch/torch-2.12/lib/libmetatomic_torch.so)
frame #6: metatomic_torch::load_atomistic_model(std::__cxx11::basic_string, std::allocator >, std::optional, std::allocator > >) + 0x6b (0x7f1a2871b26b in /home/runner/.local/lib/python3.10/site-packages/metatomic/torch/torch-2.12/lib/libmetatomic_torch.so)
frame #7: PLMD::metatomic::MetatomicPlumedAction::MetatomicPlumedAction(PLMD::ActionOptions const&) + 0x415 (0x7f1a29ce6055 in /home/runner/opt/lib/libplumedKernel.so)
frame #8: PLMD::ActionRegistration::create(PLMD::ActionOptions const&) + 0x27 (0x7f1a29cfb407 in /home/runner/opt/lib/libplumedKernel.so)
frame #9: PLMD::ActionRegister::create(std::vector > const&, PLMD::ActionOptions const&) + 0x263 (0x7f1a296f96d3 in /home/runner/opt/lib/libplumedKernel.so)
frame #10: PLMD::PlumedMain::readInputWords(std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool const&) + 0x2da (0x7f1a2978004a in /home/runner/opt/lib/libplumedKernel.so)
frame #11: PLMD::cltools::Driver::main(_IO_FILE*, _IO_FILE*, PLMD::Communicator&) + 0x6574 (0x7f1a294471a4 in /home/runner/opt/lib/libplumedKernel.so)
frame #12: PLMD::CLToolMain::run(int, char**, _IO_FILE*, _IO_FILE*, PLMD::Communicator&) + 0x72a (0x7f1a2973777a in /home/runner/opt/lib/libplumedKernel.so)
frame #13: PLMD::CLToolMain::cmd(std::basic_string_view >, PLMD::TypesafePtr const&) + 0x54e (0x7f1a2973a25e in /home/runner/opt/lib/libplumedKernel.so)
frame #14: PLMD::PlumedMain::cmd(std::basic_string_view >, PLMD::TypesafePtr const&) + 0x12f4 (0x7f1a29788544 in /home/runner/opt/lib/libplumedKernel.so)
frame #15:  + 0xb91a41 (0x7f1a29791a41 in /home/runner/opt/lib/libplumedKernel.so)
frame #16:  + 0x1e1e7 (0x5639e678a1e7 in plumed)
frame #17:  + 0x14d41 (0x5639e6780d41 in plumed)
frame #18:  + 0x29d90 (0x7f1a28429d90 in /lib/x86_64-linux-gnu/libc.so.6)
frame #19: __libc_start_main + 0x80 (0x7f1a28429e40 in /lib/x86_64-linux-gnu/libc.so.6)
frame #20:  + 0x14eb5 (0x5639e6780eb5 in plumed)

[runnervm7g52i:83554] *** Process received signal ***
[runnervm7g52i:83554] Signal: Aborted (6)
[runnervm7g52i:83554] Signal code:  (-6)
[runnervm7g52i:83554] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f1a28442520]
[runnervm7g52i:83554] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f1a284969bc]
[runnervm7g52i:83554] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f1a28442476]
[runnervm7g52i:83554] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f1a284287f3]
[runnervm7g52i:83554] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f1a288a2b9e]
[runnervm7g52i:83554] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f1a288ae20c]
[runnervm7g52i:83554] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f1a288ae277]
[runnervm7g52i:83554] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f1a288ae52b]
[runnervm7g52i:83554] [ 8] plumed(+0x14254)[0x5639e6780254]
[runnervm7g52i:83554] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f1a28429d90]
[runnervm7g52i:83554] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f1a28429e40]
[runnervm7g52i:83554] [11] plumed(+0x14eb5)[0x5639e6780eb5]
[runnervm7g52i:83554] *** End of error message ***