METATOMIC.md working 2.dat.plumed.stderr

Stderr for source: METATOMIC.md_working_2.dat
Download: zipped raw stdout - zipped raw stderr

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terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError'
what():

********** STACK DUMP **********
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD9ExceptionC1Ev+0x22b) [0x7fafbec9946b]
/home/runner/opt/lib/libplumedKernel.so(_ZNK4PLMD6Action5errorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x7b) [0x7fafbe4a3adb]
/home/runner/opt/lib/libplumedKernel.so(+0x715e45) [0x7fafbe115e45]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_9metatomic21MetatomicPlumedActionEE6createERKNS_13ActionOptionsE+0x27) [0x7fafbea5af07]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7fafbe4b1783]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7fafbe537caa]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD7cltools6DriverIdE4mainEP8_IO_FILES4_RNS_12CommunicatorE+0x6574) [0x7fafbe216ed4]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3runEiPPcP8_IO_FILES4_RNS_12CommunicatorE+0x72a) [0x7fafbe4ef61a]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x54e) [0x7fafbe4f20fe]
/home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x12f4) [0x7fafbe5401a4]
/home/runner/opt/lib/libplumedKernel.so(+0xb496a1) [0x7fafbe5496a1]
plumed(+0x1e1e7) [0x560870dba1e7]
plumed(+0x14d41) [0x560870db0d41]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7fafbd229d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7fafbd229e40]
plumed(+0x14eb5) [0x560870db0eb5]

********** END STACK DUMP **********

(core/Action.cpp:372) void PLMD::Action::error(const string&) const
ERROR in input to action METATOMIC with label soap : failed to load model at 'path/to/model.pt': open file failed because of errno 2 on fopen: No such file or directory, file path: path/to/model.pt
Exception raised from RAIIFile at /pytorch/caffe2/serialize/file_adapter.cc:24 (most recent call first):
frame #0: c10::Error::Error(c10::SourceLocation, std::__cxx11::basic_string, std::allocator >) + 0x9d (0x7fafa577ea9d in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libc10.so)
frame #1: c10::detail::torchCheckFail(char const*, char const*, unsigned int, std::__cxx11::basic_string, std::allocator > const&) + 0xca (0x7fafa570ce61 in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libc10.so)
frame #2: caffe2::serialize::FileAdapter::RAIIFile::RAIIFile(std::__cxx11::basic_string, std::allocator > const&) + 0xfd (0x7fafaa7b7e9d in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libtorch_cpu.so)
frame #3: caffe2::serialize::FileAdapter::FileAdapter(std::__cxx11::basic_string, std::allocator > const&) + 0x2e (0x7fafaa7b7eee in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libtorch_cpu.so)
frame #4: caffe2::serialize::PyTorchStreamReader::PyTorchStreamReader(std::__cxx11::basic_string, std::allocator > const&) + 0x6d (0x7fafaa7b6e9d in /home/runner/.local/lib/python3.10/site-packages/torch/lib/libtorch_cpu.so)
frame #5: metatomic_torch::load_model_extensions(std::__cxx11::basic_string, std::allocator >, std::optional, std::allocator > >) + 0x45 (0x7fafbd519a75 in /home/runner/.local/lib/python3.10/site-packages/metatomic/torch/torch-2.12/lib/libmetatomic_torch.so)
frame #6: metatomic_torch::load_atomistic_model(std::__cxx11::basic_string, std::allocator >, std::optional, std::allocator > >) + 0x6b (0x7fafbd51a38b in /home/runner/.local/lib/python3.10/site-packages/metatomic/torch/torch-2.12/lib/libmetatomic_torch.so)
frame #7: PLMD::metatomic::MetatomicPlumedAction::MetatomicPlumedAction(PLMD::ActionOptions const&) + 0x415 (0x7fafbea45985 in /home/runner/opt/lib/libplumedKernel.so)
frame #8: PLMD::ActionRegistration::create(PLMD::ActionOptions const&) + 0x27 (0x7fafbea5af07 in /home/runner/opt/lib/libplumedKernel.so)
frame #9: PLMD::ActionRegister::create(std::vector > const&, PLMD::ActionOptions const&) + 0x263 (0x7fafbe4b1783 in /home/runner/opt/lib/libplumedKernel.so)
frame #10: PLMD::PlumedMain::readInputWords(std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool const&) + 0x2da (0x7fafbe537caa in /home/runner/opt/lib/libplumedKernel.so)
frame #11: PLMD::cltools::Driver::main(_IO_FILE*, _IO_FILE*, PLMD::Communicator&) + 0x6574 (0x7fafbe216ed4 in /home/runner/opt/lib/libplumedKernel.so)
frame #12: PLMD::CLToolMain::run(int, char**, _IO_FILE*, _IO_FILE*, PLMD::Communicator&) + 0x72a (0x7fafbe4ef61a in /home/runner/opt/lib/libplumedKernel.so)
frame #13: PLMD::CLToolMain::cmd(std::basic_string_view >, PLMD::TypesafePtr const&) + 0x54e (0x7fafbe4f20fe in /home/runner/opt/lib/libplumedKernel.so)
frame #14: PLMD::PlumedMain::cmd(std::basic_string_view >, PLMD::TypesafePtr const&) + 0x12f4 (0x7fafbe5401a4 in /home/runner/opt/lib/libplumedKernel.so)
frame #15:  + 0xb496a1 (0x7fafbe5496a1 in /home/runner/opt/lib/libplumedKernel.so)
frame #16:  + 0x1e1e7 (0x560870dba1e7 in plumed)
frame #17:  + 0x14d41 (0x560870db0d41 in plumed)
frame #18:  + 0x29d90 (0x7fafbd229d90 in /lib/x86_64-linux-gnu/libc.so.6)
frame #19: __libc_start_main + 0x80 (0x7fafbd229e40 in /lib/x86_64-linux-gnu/libc.so.6)
frame #20:  + 0x14eb5 (0x560870db0eb5 in plumed)

[runnervmiav63:82510] *** Process received signal ***
[runnervmiav63:82510] Signal: Aborted (6)
[runnervmiav63:82510] Signal code:  (-6)
[runnervmiav63:82510] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fafbd242520]
[runnervmiav63:82510] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fafbd2969fc]
[runnervmiav63:82510] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fafbd242476]
[runnervmiav63:82510] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fafbd2287f3]
[runnervmiav63:82510] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7fafbd6a2b9e]
[runnervmiav63:82510] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7fafbd6ae20c]
[runnervmiav63:82510] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7fafbd6ae277]
[runnervmiav63:82510] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7fafbd6ae52b]
[runnervmiav63:82510] [ 8] plumed(+0x14254)[0x560870db0254]
[runnervmiav63:82510] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fafbd229d90]
[runnervmiav63:82510] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fafbd229e40]
[runnervmiav63:82510] [11] plumed(+0x14eb5)[0x560870db0eb5]
[runnervmiav63:82510] *** End of error message ***