PIV.md working 1.dat.plumed.stderr
Stderr for source: PIV.md_working_1.dat
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#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): ********** STACK DUMP ********** /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD9ExceptionC1Ev+0x22b) [0x7f7bb2bd7a6b] /home/runner/opt/lib/libplumedKernel.so(+0x3ca2f4) [0x7f7bb1fca2f4] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD6Action5fopenEPKcS2_+0x85) [0x7f7bb23ff575] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD3piv3PIVC1ERKNS_13ActionOptionsE+0x1221) [0x7f7bb2a78361] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_3piv3PIVEE6createERKNS_13ActionOptionsE+0x27) [0x7f7bb2a7dd67] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7f7bb240c573] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7f7bb249203a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD7cltools6DriverIdE4mainEP8_IO_FILES4_RNS_12CommunicatorE+0x6574) [0x7f7bb2179804] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3runEiPPcP8_IO_FILES4_RNS_12CommunicatorE+0x72a) [0x7f7bb2449b4a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x54e) [0x7f7bb244c62e] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x12f4) [0x7f7bb249a4f4] /home/runner/opt/lib/libplumedKernel.so(+0x8a3c31) [0x7f7bb24a3c31] plumed(+0x1e1e7) [0x560cef78d1e7] plumed(+0x14d41) [0x560cef783d41] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f7bb1429d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f7bb1429e40] plumed(+0x14eb5) [0x560cef783eb5] ********** END STACK DUMP ********** (core/PlumedMain.cpp:1550) FILE* PLMD::PlumedMain::fopen(const char*, const char*) +++ assertion failed: fp file Ref1.pdb cannot be found [runnervmyg876:58687] *** Process received signal *** [runnervmyg876:58687] Signal: Aborted (6) [runnervmyg876:58687] Signal code: (-6) [runnervmyg876:58687] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f7bb1442520] [runnervmyg876:58687] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f7bb14969fc] [runnervmyg876:58687] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f7bb1442476] [runnervmyg876:58687] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f7bb14287f3] [runnervmyg876:58687] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f7bb18a2b9e] [runnervmyg876:58687] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f7bb18ae20c] [runnervmyg876:58687] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f7bb18ae277] [runnervmyg876:58687] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f7bb18ae52b] [runnervmyg876:58687] [ 8] plumed(+0x14254)[0x560cef783254] [runnervmyg876:58687] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f7bb1429d90] [runnervmyg876:58687] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f7bb1429e40] [runnervmyg876:58687] [11] plumed(+0x14eb5)[0x560cef783eb5] [runnervmyg876:58687] *** End of error message ***