PIV.md working 2.dat.plumed.stderr
Stderr for source: PIV.md_working_2.dat
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#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): ********** STACK DUMP ********** /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD9ExceptionC1Ev+0x22b) [0x7f15d07d7a6b] /home/runner/opt/lib/libplumedKernel.so(+0x3ca2f4) [0x7f15cfbca2f4] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD6Action5fopenEPKcS2_+0x85) [0x7f15cffff575] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD3piv3PIVC1ERKNS_13ActionOptionsE+0x1221) [0x7f15d0678361] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_3piv3PIVEE6createERKNS_13ActionOptionsE+0x27) [0x7f15d067dd67] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7f15d000c573] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7f15d009203a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD7cltools6DriverIdE4mainEP8_IO_FILES4_RNS_12CommunicatorE+0x6574) [0x7f15cfd79804] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3runEiPPcP8_IO_FILES4_RNS_12CommunicatorE+0x72a) [0x7f15d0049b4a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x54e) [0x7f15d004c62e] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x12f4) [0x7f15d009a4f4] /home/runner/opt/lib/libplumedKernel.so(+0x8a3c31) [0x7f15d00a3c31] plumed(+0x1e1e7) [0x5585c3c9c1e7] plumed(+0x14d41) [0x5585c3c92d41] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f15cf029d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f15cf029e40] plumed(+0x14eb5) [0x5585c3c92eb5] ********** END STACK DUMP ********** (core/PlumedMain.cpp:1550) FILE* PLMD::PlumedMain::fopen(const char*, const char*) +++ assertion failed: fp file Ref1.pdb cannot be found [runnervmyg876:58763] *** Process received signal *** [runnervmyg876:58763] Signal: Aborted (6) [runnervmyg876:58763] Signal code: (-6) [runnervmyg876:58763] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f15cf042520] [runnervmyg876:58763] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f15cf0969fc] [runnervmyg876:58763] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f15cf042476] [runnervmyg876:58763] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f15cf0287f3] [runnervmyg876:58763] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f15cf4a2b9e] [runnervmyg876:58763] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f15cf4ae20c] [runnervmyg876:58763] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f15cf4ae277] [runnervmyg876:58763] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f15cf4ae52b] [runnervmyg876:58763] [ 8] plumed(+0x14254)[0x5585c3c92254] [runnervmyg876:58763] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f15cf029d90] [runnervmyg876:58763] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f15cf029e40] [runnervmyg876:58763] [11] plumed(+0x14eb5)[0x5585c3c92eb5] [runnervmyg876:58763] *** End of error message ***