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Summary of manual coverage

Data on this page was generated on December 04, 2025

List of pages with broken examples

There are 27 action pages with failing inputs.

Page # broken
actions.md 1
ANN 1
CALIBER 1
EDS 1
EEFSOLV 1
EMMI 1
FUNCPATHGENERAL 2
FUNCPATHMSD 1
FUNNEL 2
FUNNEL_PS 2
GHBFIX 1
JCOUPLING 1
LOAD 2
LOCALENSEMBLE 1
MAZE_OPTIMIZER_BIAS 1
MAZE_RANDOM_ACCELERATION_MD 1
MAZE_SIMULATED_ANNEALING 1
MAZE_STEERED_MD 1
METATOMIC 2
PIV 2
PLUMED 2
SANS 1
SAXS 1
SHADOW 2
VES_DELTA_F 1
VES_LINEAR_EXPANSION 4
VES_OUTPUT_FES 1

List of actions that have undocumented keywords

There are 1 actions with undocumented keywords

Action Module
FISST fisst

List of actions that have no examples in manual

There are 6 action pages with no examples.

Action Module
BAIES isdb
EMMIVOX isdb
FUNCSUMHILLS function
OPT_ADAM ves
OPT_ROBBINS_MONRO_SGD ves
S2CM s2cm

List of actions for which there are not exemplers of all keywords.

There are 138 action pages which don't have examples that illustrate how to use all the keywords. On these documentation pages keywords that do not appear in at least one example are shown in red in the syntax table.

Action Module
ABMD bias
ANN annfunc
BAIES isdb
BF_CHEBYSHEV ves
BF_COMBINED ves
BF_COSINE ves
BF_CUBIC_B_SPLINES ves
BF_CUSTOM ves
BF_FOURIER ves
BF_GAUSSIANS ves
BF_LEGENDRE ves
BF_POWERS ves
BF_SINE ves
BF_WAVELETS ves
CALIBER isdb
COMMITTOR generic
CONTACTMAP colvar
COORDINATION colvar
COORDINATION_SHELL_AVERAGE symfunc
COORDINATION_SHELL_FUNCTION symfunc
CS2BACKBONE isdb
DEBUG generic
DHENERGY colvar
DIMER colvar
DRR drr
ECV_CUSTOM opes
ECV_LINEAR opes
ECV_MULTITHERMAL opes
ECV_MULTITHERMAL_MULTIBARIC opes
ECV_UMBRELLAS_FILE opes
ECV_UMBRELLAS_LINE opes
EDS eds
EEFSOLV colvar
EFFECTIVE_ENERGY_DRIFT generic
EMMI isdb
EMMIVOX isdb
ENSEMBLE function
ERMSD colvar
EXTENDED_LAGRANGIAN bias
EXTERNAL bias
FAKE colvar
FCCUBIC symfunc
FISST fisst
FIT_TO_TEMPLATE generic
FRET isdb
FUNCPATHGENERAL function
FUNCPATHMSD function
FUNCSUMHILLS function
FUNNEL funnel
FUNNEL_PS funnel
FUSIONPOREEXPANSIONP membranefusion
FUSIONPORENUCLEATIONP membranefusion
GHBFIX colvar
GHOST vatom
JCOUPLING isdb
LOCALENSEMBLE function
LOCAL_AVERAGE symfunc
LOCAL_Q1 symfunc
LOCAL_Q3 symfunc
LOCAL_Q4 symfunc
LOCAL_Q6 symfunc
LOGMFD logmfd
MAXENT bias
MAZE_LOSS maze
MAZE_MEMETIC_SAMPLING maze
MAZE_OPTIMIZER_BIAS maze
MAZE_RANDOM_ACCELERATION_MD maze
MAZE_RANDOM_WALK maze
MAZE_SIMULATED_ANNEALING maze
MAZE_STEERED_MD maze
MEMFUSIONP membranefusion
METAD bias
METAINFERENCE isdb
METATOMIC metatomic
MOLINFO generic
MOVINGRESTRAINT bias
NOE isdb
OPES_EXPANDED opes
OPES_METAD opes
OPES_METAD_EXPLORE opes
OPT_ADAM ves
OPT_AVERAGED_SGD ves
OPT_DUMMY ves
OPT_ROBBINS_MONRO_SGD ves
PAIRENTROPIES gridtools
PAIRENTROPY gridtools
PATHMSD colvar
PBMETAD bias
PCARMSD colvar
PCS isdb
PIV piv
PLUMED generic
PRE isdb
PROJECTION_ON_AXIS colvar
PROPERTYMAP colvar
PUCKERING colvar
PYTORCH_MODEL pytorch
Q1 symfunc
Q3 symfunc
Q4 symfunc
Q6 symfunc
RDC isdb
RESCALE isdb
S2CM s2cm
SANS isdb
SASA_HASEL sasa
SASA_LCPO sasa
SAXS isdb
SELECT isdb
SHADOW isdb
SIMPLECUBIC symfunc
SIZESHAPE_POSITION_LINEAR_PROJ sizeshape
SIZESHAPE_POSITION_MAHA_DIST sizeshape
STATS function
TD_CHI ves
TD_CHISQUARED ves
TD_CUSTOM ves
TD_EXPONENTIAL ves
TD_EXPONENTIALLY_MODIFIED_GAUSSIAN ves
TD_GAUSSIAN ves
TD_GENERALIZED_EXTREME_VALUE ves
TD_GENERALIZED_NORMAL ves
TD_GRID ves
TD_LINEAR_COMBINATION ves
TD_MULTICANONICAL ves
TD_MULTITHERMAL_MULTIBARIC ves
TD_PRODUCT_COMBINATION ves
TD_PRODUCT_DISTRIBUTION ves
TD_VONMISES ves
TEMPLATE colvar
TETRAHEDRAL symfunc
VES_DELTA_F ves
VES_LINEAR_EXPANSION ves
VES_OUTPUT_BASISFUNCTIONS ves
VES_OUTPUT_TARGET_DISTRIBUTION ves
WHAM_WEIGHTS wham
WHOLEMOLECULES generic
WRAPAROUND generic