PLMD::bias::PBMetaD Member List

This is the complete list of members for PLMD::bias::PBMetaD, including all inherited members.

Action(const ActionOptions &)PLMD::Actionexplicit
ActionPilot(const ActionOptions &)PLMD::ActionPilotexplicit
ActionWithArguments(const ActionOptions &)PLMD::ActionWithArgumentsexplicit
ActionWithValue(const ActionOptions &ao)PLMD::ActionWithValueexplicit
activate()PLMD::Actionvirtual
addComponent(const std::string &name)PLMD::ActionWithValue
addComponentWithDerivatives(const std::string &name)PLMD::ActionWithValue
addDependency(Action *)PLMD::Action
addForcesOnArguments(const std::vector< double > &forces)PLMD::ActionWithArguments
addGaussian(unsigned iarg, const Gaussian &)PLMD::bias::PBMetaDprivate
addValue()PLMD::ActionWithValue
addValueWithDerivatives()PLMD::ActionWithValue
apply()PLMD::bias::Biasvirtual
beforeUpdate()PLMD::Actioninlinevirtual
Bias(const ActionOptions &ao)PLMD::bias::Biasexplicit
biasf_PLMD::bias::PBMetaDprivate
BiasGrids_PLMD::bias::PBMetaDprivate
bringBackInPbc(int i, double d1) constPLMD::ActionWithArgumentsinline
calculate()PLMD::bias::PBMetaDvirtual
calculateFromPDB(const PDB &)PLMD::Action
PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::Actionvirtual
PLMD::ActionWithArguments::calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::ActionWithArgumentsvirtual
checkFieldsAllowed()PLMD::ActionWithValueinlinevirtual
checkNeedsGradients() constPLMD::Actioninlinevirtual
PLMD::checkNumericalDerivatives() constPLMD::Actioninlinevirtual
PLMD::ActionWithValue::checkNumericalDerivatives() constPLMD::ActionWithValueinlinevirtual
checkRead()PLMD::Action
checkUpdate() constPLMD::Action
cite(const std::string &s)PLMD::Action
clearDependencies()PLMD::Action
clearDerivatives()PLMD::ActionWithValuevirtual
clearInputForces()PLMD::ActionWithValue
clearOptions()PLMD::Actionvirtual
commPLMD::Action
componentIsNotPeriodic(const std::string &name)PLMD::ActionWithValue
componentIsPeriodic(const std::string &name, const std::string &min, const std::string &max)PLMD::ActionWithValue
componentsAreNotOptional(Keywords &keys)PLMD::ActionWithValuestatic
copyOutput(const std::string &name) constPLMD::ActionWithValue
copyOutput(const unsigned &n) constPLMD::ActionWithValue
deactivate()PLMD::Actioninlinevirtual
Dependencies typedefPLMD::Action
difference(int, double, double) constPLMD::ActionWithArgumentsinline
doInt_PLMD::bias::PBMetaDprivate
doNotCalculateDerivatives() constPLMD::ActionWithValueinlinevirtual
error(const std::string &msg) constPLMD::Action
evaluateGaussian(unsigned iarg, const vector< double > &, const Gaussian &, double *der=NULL)PLMD::bias::PBMetaDprivate
exists(const std::string &name) constPLMD::ActionWithValue
exit(int c=0)PLMD::Action
expandArgKeywordInPDB(PDB &pdb)PLMD::ActionWithArgumentsprotected
fclose(FILE *fp)PLMD::Action
fflush()PLMD::Action
filesPLMD::Action
files_iterator typedefPLMD::Action
fmtPLMD::bias::PBMetaDprivate
fopen(const char *path, const char *mode)PLMD::Action
getArgument(const unsigned n) constPLMD::ActionWithArgumentsinline
getArguments() constPLMD::ActionWithArgumentsinline
getBiasAndDerivatives(unsigned iarg, const vector< double > &, double *der=NULL)PLMD::bias::PBMetaDprivate
getComponentsList() constPLMD::ActionWithValue
getComponentsVector() constPLMD::ActionWithValue
getCPT() constPLMD::Action
getDependencies() constPLMD::Actioninline
getDocumentation() constPLMD::Actionvirtual
getExchangeStep() constPLMD::Action
getGaussianSupport(unsigned iarg, const Gaussian &)PLMD::bias::PBMetaDprivate
getKeyword(const std::string &key)PLMD::Action
getLabel() constPLMD::Actioninline
getName() constPLMD::Actioninline
getNumberOfArguments() constPLMD::ActionWithArgumentsinlinevirtual
getNumberOfComponents() constPLMD::ActionWithValueinline
getNumberOfDerivatives()PLMD::bias::Biasinlinevirtual
getOutputQuantity(const unsigned j) constPLMD::ActionWithValueinline
getOutputQuantity(const std::string &name) constPLMD::ActionWithValueinline
getPntrToArgument(const unsigned n)PLMD::ActionWithArgumentsinline
getPntrToComponent(int i)PLMD::ActionWithValueprotected
getPntrToComponent(const std::string &name)PLMD::ActionWithValueprotected
getPntrToValue()PLMD::ActionWithValueprotected
getProjection(unsigned i, unsigned j) constPLMD::ActionWithArguments
getRestart() constPLMD::Actioninline
getStep() constPLMD::Action
getStride() constPLMD::ActionPilot
getTime() constPLMD::Action
getTimeStep() constPLMD::Action
grid_PLMD::bias::PBMetaDprivate
gridfiles_PLMD::bias::PBMetaDprivate
height0_PLMD::bias::PBMetaDprivate
hills_PLMD::bias::PBMetaDprivate
hillsOfiles_PLMD::bias::PBMetaDprivate
interpretArgumentList(const std::vector< std::string > &c, std::vector< Value *> &arg)PLMD::ActionWithArguments
isActive() constPLMD::Actioninline
isFirstStepPLMD::bias::PBMetaDprivate
isOptionOn(const std::string &s) constPLMD::Actioninline
kbt_PLMD::bias::PBMetaDprivate
keywordsPLMD::Action
PLMD::lockRequests()PLMD::Actioninlinevirtual
PLMD::ActionWithArguments::lockRequests()PLMD::ActionWithArgumentsinlinevirtual
logPLMD::Action
lowI_PLMD::bias::PBMetaDprivate
multi_sim_commPLMD::Action
multiple_wPLMD::bias::PBMetaDprivate
mw_PLMD::bias::PBMetaDprivate
noAnalyticalDerivatives(Keywords &keys)PLMD::ActionWithValuestatic
nw_PLMD::bias::PBMetaDprivate
onStep() constPLMD::ActionPilotvirtual
parse(const std::string &key, T &t)PLMD::Action
parseArgumentList(const std::string &key, std::vector< Value *> &args)PLMD::ActionWithArguments
parseArgumentList(const std::string &key, int i, std::vector< Value *> &args)PLMD::ActionWithArguments
parseFlag(const std::string &key, bool &t)PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)PLMD::Action
PBMetaD(const ActionOptions &)PLMD::bias::PBMetaDexplicit
plumedPLMD::Action
prepare()PLMD::Actionvirtual
readAtomsFromPDB(const PDB &)PLMD::Actioninlinevirtual
readChunkOfGaussians(unsigned iarg, IFile *ifile, unsigned n)PLMD::bias::PBMetaDprivate
readGaussians(unsigned iarg, IFile *)PLMD::bias::PBMetaDprivate
registerKeywords(Keywords &keys)PLMD::bias::PBMetaDstatic
requestArguments(const std::vector< Value *> &arg)PLMD::ActionWithArguments
runFinalJobs()PLMD::Actioninlinevirtual
scanOneHill(unsigned iarg, IFile *ifile, vector< Value > &v, vector< double > &center, vector< double > &sigma, double &height)PLMD::bias::PBMetaDprivate
setBias(double bias)PLMD::bias::Biasinlineprotected
setGradientsIfNeeded()PLMD::ActionWithValue
setNotPeriodic()PLMD::ActionWithValue
setOption(const std::string &s)PLMD::Actionvirtual
setOutputForce(int i, double f)PLMD::bias::Biasinlineprotected
setPeriodic(const std::string &min, const std::string &max)PLMD::ActionWithValue
setValue(const double &d)PLMD::ActionWithValueinlineprotected
setValue(Value *, double)PLMD::ActionWithValue
sigma0_PLMD::bias::PBMetaDprivate
stride_PLMD::bias::PBMetaDprivate
turnOnDerivatives()PLMD::ActionWithValuevirtual
PLMD::unlockRequests()PLMD::Actioninlinevirtual
PLMD::ActionWithArguments::unlockRequests()PLMD::ActionWithArgumentsinlinevirtual
update()PLMD::bias::PBMetaDvirtual
uppI_PLMD::bias::PBMetaDprivate
useCustomisableComponents(Keywords &keys)PLMD::ActionWithValuestatic
useNumericalDerivatives()PLMD::ActionWithValueinline
warning(const std::string &msg)PLMD::Action
welltemp_PLMD::bias::PBMetaDprivate
wgridstride_PLMD::bias::PBMetaDprivate
writeGaussian(unsigned iarg, const Gaussian &, OFile *)PLMD::bias::PBMetaDprivate
~Action()PLMD::Actionvirtual
~ActionWithArguments()PLMD::ActionWithArgumentsinlinevirtual
~ActionWithValue()PLMD::ActionWithValue
~PBMetaD()PLMD::bias::PBMetaD
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