Bug List
Page CENTER_OF_MULTICOLVAR
The virial contribution for this type of virtual atom is not currently evaluated so do not use in bias functions unless the volume of the cell is fixed
Page ENERGY

This ENERGY does not include long tail corrections. Thus when using e.g. LAMMPS "pair_modify tail yes" or GROMACS "DispCorr Ener" (or "DispCorr EnerPres"), the potential energy from ENERGY will be slightly different form the one of the MD code. You should still be able to use ENERGY and then reweight your simulation with the correct MD energy value.

Acceptance for replica exchange when ENERGY is biased is computed correctly only if all the replicas have the same potential energy function. This is for instance not true when using GROMACS with lambda replica exchange or with plumed-hrex branch.

Page MOLINFO

At the moment the HA1 atoms in a GLY residues are treated as if they are the CB atoms. This may or may not be true - GLY is problematic for secondary structure residues as it is achiral.

If you use WHOLEMOLECULES RESIDUES=1-10 for a 18 amino acid protein ( 18 amino acids + 2 terminal groups = 20 residues ) the code will fail as it will not be able to interpret terminal residue 1.

Page namd-2.12
NAMD does not currently take into account virial contributions from PLUMED. Please use constant volume simulations only.
Page namd-2.13
NAMD does not currently take into account virial contributions from PLUMED. Please use constant volume simulations only.
Page PCAVARS
It is not possible to use the DRMSD metric with this variable. You can get around this by listing the set of distances you wish to calculate for your DRMSD in the plumed file explicitly and using the EUCLIDEAN metric. MAHALONOBIS and NORM-EUCLIDEAN also do not work with this variable but using these options makes little sense when projecting on a linear subspace.