This is the complete list of members for PLMD::ERMSD, including all inherited members.
calcMat(const std::vector< Vector > &positions, const Pbc &pbc, std::vector< Vector4d > &mat, std::vector< TensorGeneric< 4, 3 > > &Gderivatives) | PLMD::ERMSD | |
calculate(const std::vector< Vector > &positions, const Pbc &pbc, std::vector< Vector > &derivatives, Tensor &virial) | PLMD::ERMSD | |
clear() | PLMD::ERMSD | |
cutoff | PLMD::ERMSD | private |
ERMSD() | PLMD::ERMSD | inline |
inPair(unsigned i, unsigned j) | PLMD::ERMSD | |
natoms | PLMD::ERMSD | private |
nresidues | PLMD::ERMSD | private |
pairs | PLMD::ERMSD | private |
reference_mat | PLMD::ERMSD | private |
setReference(const std::vector< Vector > &reference, const std::vector< unsigned > &pairs_vec, double mycutoff=0.24) | PLMD::ERMSD | |