| box | PLMD::MDAtomsTyped< T > | private |
| c | PLMD::MDAtomsTyped< T > | private |
| create(unsigned n) | PLMD::MDAtomsBase | static |
| double2MD(const double &d, const TypesafePtr &m) const override | PLMD::MDAtomsTyped< T > | inlinevirtual |
| extraCV | PLMD::MDAtomsTyped< T > | private |
| extraCVForce | PLMD::MDAtomsTyped< T > | private |
| f | PLMD::MDAtomsTyped< T > | private |
| fx | PLMD::MDAtomsTyped< T > | private |
| fy | PLMD::MDAtomsTyped< T > | private |
| fz | PLMD::MDAtomsTyped< T > | private |
| getBox(Tensor &) const override | PLMD::MDAtomsTyped< T > | virtual |
| getCharges(const std::vector< int > &index, std::vector< double > &) const override | PLMD::MDAtomsTyped< T > | virtual |
| getExtraCV(const std::string &name) override | PLMD::MDAtomsTyped< T > | inlinevirtual |
| getLocalPositions(std::vector< Vector > &p) const override | PLMD::MDAtomsTyped< T > | virtual |
| getMasses(const std::vector< int > &index, std::vector< double > &) const override | PLMD::MDAtomsTyped< T > | virtual |
| getMDforces(const unsigned index) const override | PLMD::MDAtomsTyped< T > | inlinevirtual |
| getPositions(const std::vector< int > &index, std::vector< Vector > &positions) const override | PLMD::MDAtomsTyped< T > | virtual |
| getPositions(const std::set< AtomNumber > &index, const std::vector< unsigned > &i, std::vector< Vector > &positions) const override | PLMD::MDAtomsTyped< T > | virtual |
| getPositions(unsigned j, unsigned k, std::vector< Vector > &positions) const override | PLMD::MDAtomsTyped< T > | virtual |
| getRealPrecision() const override | PLMD::MDAtomsTyped< T > | virtual |
| m | PLMD::MDAtomsTyped< T > | private |
| MD2double(const TypesafePtr &m, double &d) const override | PLMD::MDAtomsTyped< T > | inlinevirtual |
| p | PLMD::MDAtomsTyped< T > | private |
| px | PLMD::MDAtomsTyped< T > | private |
| py | PLMD::MDAtomsTyped< T > | private |
| pz | PLMD::MDAtomsTyped< T > | private |
| rescaleForces(const std::vector< int > &index, double factor) override | PLMD::MDAtomsTyped< T > | virtual |
| scaleb | PLMD::MDAtomsTyped< T > | private |
| scalec | PLMD::MDAtomsTyped< T > | private |
| scalef | PLMD::MDAtomsTyped< T > | private |
| scalem | PLMD::MDAtomsTyped< T > | private |
| scalep | PLMD::MDAtomsTyped< T > | private |
| scalev | PLMD::MDAtomsTyped< T > | private |
| setBox(const TypesafePtr &) override | PLMD::MDAtomsTyped< T > | virtual |
| setc(const TypesafePtr &m) override | PLMD::MDAtomsTyped< T > | virtual |
| setExtraCV(const std::string &name, const TypesafePtr &p) override | PLMD::MDAtomsTyped< T > | inlinevirtual |
| setExtraCVForce(const std::string &name, const TypesafePtr &p) override | PLMD::MDAtomsTyped< T > | inlinevirtual |
| setf(const TypesafePtr &f) override | PLMD::MDAtomsTyped< T > | virtual |
| setf(const TypesafePtr &f, int i) override | PLMD::MDAtomsTyped< T > | virtual |
| setm(const TypesafePtr &m) override | PLMD::MDAtomsTyped< T > | virtual |
| setp(const TypesafePtr &p) override | PLMD::MDAtomsTyped< T > | virtual |
| setp(const TypesafePtr &p, int i) override | PLMD::MDAtomsTyped< T > | virtual |
| setUnits(const Units &, const Units &) override | PLMD::MDAtomsTyped< T > | virtual |
| setVirial(const TypesafePtr &) override | PLMD::MDAtomsTyped< T > | virtual |
| updateExtraCVForce(const std::string &name, double f) override | PLMD::MDAtomsTyped< T > | inlinevirtual |
| updateForces(const std::vector< int > &index, const std::vector< Vector > &) override | PLMD::MDAtomsTyped< T > | virtual |
| updateForces(const std::set< AtomNumber > &index, const std::vector< unsigned > &i, const std::vector< Vector > &forces) override | PLMD::MDAtomsTyped< T > | virtual |
| updateVirial(const Tensor &) const override | PLMD::MDAtomsTyped< T > | virtual |
| virial | PLMD::MDAtomsTyped< T > | private |
| ~MDAtomsBase() | PLMD::MDAtomsBase | inlinevirtual |
1.8.17