PLMD::ReferenceConfiguration Member List

This is the complete list of members for PLMD::ReferenceConfiguration, including all inherited members.

calc(const std::vector< Vector > &pos, const Pbc &pbc, const std::vector< Value * > &vals, const std::vector< double > &args, ReferenceValuePack &myder, const bool &squared) const =0	PLMD::ReferenceConfiguration	pure virtual
calculate(const std::vector< Vector > &pos, const Pbc &pbc, const std::vector< Value * > &vals, ReferenceValuePack &myder, const bool &squared=false) const	PLMD::ReferenceConfiguration
copyDerivatives(const ReferenceConfiguration *)	PLMD::ReferenceConfiguration
displaceReferenceConfiguration(const double &weight, Direction &dir)	PLMD::ReferenceConfiguration
distance(const Pbc &pbc, const std::vector< Value * > &vals, ReferenceConfiguration *, ReferenceConfiguration *, const bool &squared)	PLMD::ReferenceConfiguration	friend
error(const std::string &msg)	PLMD::ReferenceConfiguration	protected
extractDisplacementVector(const std::vector< Vector > &pos, const std::vector< Value * > &vals, const std::vector< double > &arg, const bool &nflag, Direction &mydir) const	PLMD::ReferenceConfiguration
fake_arg_names	PLMD::ReferenceConfiguration	private
fake_atom_numbers	PLMD::ReferenceConfiguration	private
fake_metric	PLMD::ReferenceConfiguration	private
fake_refargs	PLMD::ReferenceConfiguration	private
fake_refatoms	PLMD::ReferenceConfiguration	private
getAbsoluteIndexes()	PLMD::ReferenceConfiguration	inlinevirtual
getArgumentNames()	PLMD::ReferenceConfiguration	inlinevirtual
getArgumentRequests(std::vector< std::string > &, bool disable_checks=false)	PLMD::ReferenceConfiguration	inlinevirtual
getAtomRequests(std::vector< AtomNumber > &, bool disable_checks=false)	PLMD::ReferenceConfiguration	inlinevirtual
getName() const	PLMD::ReferenceConfiguration
getNumberOfReferenceArguments() const	PLMD::ReferenceConfiguration	inlinevirtual
getNumberOfReferencePositions() const	PLMD::ReferenceConfiguration	inlinevirtual
getReferenceArgument(const unsigned &i) const	PLMD::ReferenceConfiguration	inlinevirtual
getReferenceArguments() const	PLMD::ReferenceConfiguration	inlinevirtual
getReferenceMetric()	PLMD::ReferenceConfiguration	inlinevirtual
getReferencePositions() const	PLMD::ReferenceConfiguration	inlinevirtual
line	PLMD::ReferenceConfiguration	private
name	PLMD::ReferenceConfiguration	private
pcaIsEnabledForThisReference()	PLMD::ReferenceConfiguration	inlinevirtual
projectDisplacementOnVector(const Direction &mydir, const std::vector< Value * > &vals, const std::vector< double > &arg, ReferenceValuePack &mypack) const	PLMD::ReferenceConfiguration
read(const PDB &)=0	PLMD::ReferenceConfiguration	pure virtual
ReferenceConfiguration(const ReferenceConfigurationOptions &ro)	PLMD::ReferenceConfiguration	explicit
setupPCAStorage(ReferenceValuePack &mypack)	PLMD::ReferenceConfiguration	inlinevirtual
SingleDomainRMSD class	PLMD::ReferenceConfiguration	friend
~ReferenceConfiguration()	PLMD::ReferenceConfiguration	virtual