PLMD::eds::EDS Member List

This is the complete list of members for PLMD::eds::EDS, including all inherited members.

Action(const ActionOptions &)PLMD::Actionexplicit
Action(const Action &a)=deletePLMD::Actionprivate
ActionPilot(const ActionOptions &)PLMD::ActionPilotexplicit
ActionWithArguments(const ActionOptions &)PLMD::ActionWithArgumentsexplicit
ActionWithValue(const ActionOptions &ao)PLMD::ActionWithValueexplicit
activate()PLMD::Actionvirtual
activePLMD::Actionprivate
addComponent(const std::string &name)PLMD::ActionWithValue
addComponentWithDerivatives(const std::string &name)PLMD::ActionWithValue
addDependency(Action *)PLMD::Action
addForcesOnArguments(const std::vector< double > &forces)PLMD::ActionWithArguments
addValue()PLMD::ActionWithValue
addValueWithDerivatives()PLMD::ActionWithValue
afterPLMD::Actionprivate
alpha_vector_PLMD::eds::EDSprivate
alpha_vector_2_PLMD::eds::EDSprivate
apply() overridePLMD::bias::Biasvirtual
apply_bias()PLMD::eds::EDSprivate
argumentsPLMD::ActionWithArgumentsprivate
avg_coupling_count_PLMD::eds::EDSprivate
b_adaptive_PLMD::eds::EDSprivate
b_c_values_PLMD::eds::EDSprivate
b_covar_PLMD::eds::EDSprivate
b_equil_PLMD::eds::EDSprivate
b_freeze_PLMD::eds::EDSprivate
b_lm_PLMD::eds::EDSprivate
b_ramp_PLMD::eds::EDSprivate
b_restart_PLMD::eds::EDSprivate
b_update_virial_PLMD::eds::EDSprivate
b_virial_PLMD::eds::EDSprivate
b_weights_PLMD::eds::EDSprivate
b_write_restart_PLMD::eds::EDSprivate
beforeUpdate()PLMD::Actioninlinevirtual
Bias(const ActionOptions &ao)PLMD::bias::Biasexplicit
bringBackInPbc(int i, double d1) constPLMD::ActionWithArgumentsinline
calc_covar_step_size()PLMD::eds::EDSprivate
calc_lm_step_size()PLMD::eds::EDSprivate
calc_ssd_step_size()PLMD::eds::EDSprivate
calculate()PLMD::eds::EDSvirtual
calculateFromPDB(const PDB &)PLMD::Action
PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::Actionvirtual
PLMD::ActionWithArguments::calculateNumericalDerivatives(ActionWithValue *a=NULL) overridePLMD::ActionWithArgumentsvirtual
center_PLMD::eds::EDSprivate
center_values_PLMD::eds::EDSprivate
checkFieldsAllowed()PLMD::ActionWithValueinlinevirtual
checkNeedsGradients() constPLMD::Actioninlinevirtual
PLMD::checkNumericalDerivatives() constPLMD::Actioninlinevirtual
PLMD::ActionWithValue::checkNumericalDerivatives() const overridePLMD::ActionWithValueinlinevirtual
checkRead()PLMD::Action
checkUpdate() constPLMD::Action
cite(const std::string &s)PLMD::Action
clearDependencies()PLMD::Action
clearDerivatives()PLMD::ActionWithValuevirtual
clearInputForces()PLMD::ActionWithValue
clearOptions()PLMD::Actionvirtual
commPLMD::Action
componentIsNotPeriodic(const std::string &name)PLMD::ActionWithValue
componentIsPeriodic(const std::string &name, const std::string &min, const std::string &max)PLMD::ActionWithValue
componentsAreNotOptional(Keywords &keys)PLMD::ActionWithValuestatic
copyOutput(const std::string &name) constPLMD::ActionWithValue
copyOutput(const unsigned &n) constPLMD::ActionWithValue
coupling_accum_PLMD::eds::EDSprivate
coupling_rate_PLMD::eds::EDSprivate
covar2_PLMD::eds::EDSprivate
covar_PLMD::eds::EDSprivate
current_coupling_PLMD::eds::EDSprivate
deactivate()PLMD::Actioninlinevirtual
Dependencies typedefPLMD::Action
difference(int, double, double) constPLMD::ActionWithArgumentsinline
differences_PLMD::eds::EDSprivate
doCheckPointPLMD::Actionprivate
doNotCalculateDerivatives() constPLMD::ActionWithValueinlinevirtual
EDS(const ActionOptions &)PLMD::eds::EDSexplicit
error(const std::string &msg) constPLMD::Action
exists(const std::string &name) constPLMD::ActionWithValue
exit(int c=0)PLMD::Action
expandArgKeywordInPDB(const PDB &pdb)PLMD::ActionWithArgumentsprotected
fclose(FILE *fp)PLMD::Action
fflush()PLMD::Action
filesPLMD::Action
fmt_PLMD::eds::EDSprivate
fopen(const char *path, const char *mode)PLMD::Action
getArgument(const unsigned n) constPLMD::ActionWithArgumentsinline
getArguments() constPLMD::ActionWithArgumentsinlinevirtual
getComponent(const std::string &name) constPLMD::ActionWithValueprivate
getComponentsList() constPLMD::ActionWithValue
getComponentsVector() constPLMD::ActionWithValue
getCPT() constPLMD::Action
getDependencies() constPLMD::Actioninline
getDocumentation() constPLMD::Actionvirtual
getExchangeStep() constPLMD::Action
getKeyword(const std::string &key)PLMD::Action
getLabel() constPLMD::Actioninline
getName() constPLMD::Actioninline
getNumberOfArguments() constPLMD::ActionWithArgumentsinlinevirtual
getNumberOfComponents() constPLMD::ActionWithValueinline
getNumberOfDerivatives() overridePLMD::bias::Biasinlinevirtual
getOutputQuantity(const unsigned j) constPLMD::ActionWithValueinline
getOutputQuantity(const std::string &name) constPLMD::ActionWithValueinline
getPntrToArgument(const unsigned n)PLMD::ActionWithArgumentsinline
getPntrToComponent(int i)PLMD::ActionWithValueprotected
getPntrToComponent(const std::string &name)PLMD::ActionWithValueprotected
getPntrToValue()PLMD::ActionWithValueprotected
getProjection(unsigned i, unsigned j) constPLMD::ActionWithArguments
getRestart() constPLMD::Actioninline
getStep() constPLMD::Action
getStride() constPLMD::ActionPilot
getTime() constPLMD::Action
getTimeStep() constPLMD::Action
in_restart_PLMD::eds::EDSprivate
in_restart_name_PLMD::eds::EDSprivate
interpretArgumentList(const std::vector< std::string > &c, std::vector< Value * > &arg)PLMD::ActionWithArguments
isActive() constPLMD::Actioninline
isOptionOn(const std::string &s) constPLMD::Actioninline
kbt_PLMD::eds::EDSprivate
keywordsPLMD::Action
labelPLMD::Actionprivate
linePLMD::Actionprivate
lm_inv_PLMD::eds::EDSprivate
lm_mixing_par_PLMD::eds::EDSprivate
lockRequestArgumentsPLMD::ActionWithArgumentsprivate
PLMD::lockRequests()PLMD::Actioninlinevirtual
PLMD::ActionWithArguments::lockRequests() overridePLMD::ActionWithArgumentsinlinevirtual
logPLMD::Action
logweights_PLMD::eds::EDSprivate
max_coupling_grad_PLMD::eds::EDSprivate
max_coupling_range_PLMD::eds::EDSprivate
max_logweight_PLMD::eds::EDSprivate
means_PLMD::eds::EDSprivate
multi_prop_PLMD::eds::EDSprivate
multi_sim_commPLMD::Action
namePLMD::Actionprivate
ncvs_PLMD::eds::EDSprivate
noAnalyticalDerivatives(Keywords &keys)PLMD::ActionWithValuestatic
noderivPLMD::ActionWithValueprivate
numericalDerivativesPLMD::ActionWithValueprivate
onStep() constPLMD::ActionPilotvirtual
operator=(const Action &a)=deletePLMD::Actionprivate
optionsPLMD::Actionprivate
out_coupling_PLMD::eds::EDSprivate
out_restart_PLMD::eds::EDSprivate
out_restart_name_PLMD::eds::EDSprivate
outputForcesPLMD::bias::Biasprivate
parse(const std::string &key, T &t)PLMD::Action
parseArgumentList(const std::string &key, std::vector< Value * > &args)PLMD::ActionWithArguments
parseArgumentList(const std::string &key, int i, std::vector< Value * > &args)PLMD::ActionWithArguments
parseFlag(const std::string &key, bool &t)PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)PLMD::Action
plumedPLMD::Action
prepare()PLMD::Actionvirtual
pseudo_virial_PLMD::eds::EDSprivate
pseudo_virial_sum_PLMD::eds::EDSprivate
rand_PLMD::eds::EDSprivate
readAtomsFromPDB(const PDB &)PLMD::Actioninlinevirtual
readInRestart(const bool b_mean)PLMD::eds::EDSprivate
registerKeywords(Keywords &keys)PLMD::eds::EDSstatic
replica_indexPLMD::Actionprivate
requestArguments(const std::vector< Value * > &arg)PLMD::ActionWithArguments
requestExtraDependencies(const std::vector< Value * > &extra)PLMD::ActionWithArguments
reset_statistics()PLMD::eds::EDSprivate
restartPLMD::Actionprivate
runFinalJobs()PLMD::Actioninlinevirtual
scale_PLMD::eds::EDSprivate
seed_PLMD::eds::EDSprivate
set_coupling_PLMD::eds::EDSprivate
setBias(double bias)PLMD::bias::Biasinlineprotected
setGradientsIfNeeded()PLMD::ActionWithValue
setNotPeriodic()PLMD::ActionWithValue
setOption(const std::string &s)PLMD::Actionvirtual
setOutputForce(int i, double f)PLMD::bias::Biasinlineprotected
setPeriodic(const std::string &min, const std::string &max)PLMD::ActionWithValue
setStride(const int &n)PLMD::ActionPilot
setupOutRestart()PLMD::eds::EDSprivate
setValue(const double &d)PLMD::ActionWithValueinlineprotected
setValue(Value *, double)PLMD::ActionWithValue
ssds_PLMD::eds::EDSprivate
step_size_PLMD::eds::EDSprivate
stridePLMD::ActionPilotprivate
target_coupling_PLMD::eds::EDSprivate
turnOnDerivatives()PLMD::eds::EDSvirtual
PLMD::unlockRequests()PLMD::Actioninlinevirtual
PLMD::ActionWithArguments::unlockRequests() overridePLMD::ActionWithArgumentsinlinevirtual
update()PLMD::eds::EDSvirtual
update_bias()PLMD::eds::EDSprivate
update_calls_PLMD::eds::EDSprivate
update_fromPLMD::Actionprivate
update_period_PLMD::eds::EDSprivate
update_pseudo_virial()PLMD::eds::EDSprivate
update_statistics()PLMD::eds::EDSprivate
update_untilPLMD::Actionprivate
useCustomisableComponents(Keywords &keys)PLMD::ActionWithValuestatic
useNumericalDerivatives()PLMD::ActionWithValueinline
value_force2_PLMD::eds::EDSprivate
value_pressure_PLMD::eds::EDSprivate
valueBiasPLMD::bias::Biasprivate
valuesPLMD::ActionWithValueprivate
virial_scaling_PLMD::eds::EDSprivate
warning(const std::string &msg)PLMD::Action
writeOutRestart()PLMD::eds::EDSprivate
wsum_PLMD::eds::EDSprivate
~Action()PLMD::Actionvirtual
~ActionWithArguments()PLMD::ActionWithArgumentsinlinevirtual
~ActionWithValue()PLMD::ActionWithValue
~EDS()PLMD::eds::EDS