addAtomsDerivatives(const unsigned &, const unsigned &, const Vector &) | PLMD::multicolvar::AtomValuePack | inlineprivate |
addBoxDerivatives(const unsigned &, const Tensor &) | PLMD::multicolvar::AtomValuePack | inline |
addComDerivatives(const int &, const Vector &, const CatomPack &) | PLMD::multicolvar::AtomValuePack | |
addDerivative(const unsigned &, const unsigned &, const double &) | PLMD::multicolvar::AtomValuePack | inline |
addTemporyAtomsDerivatives(const unsigned &jder, const Vector &der) | PLMD::multicolvar::AtomValuePack | inlineprivate |
addTemporyBoxDerivatives(const Tensor &vir) | PLMD::multicolvar::AtomValuePack | inline |
addValue(const unsigned &ival, const double &vv) | PLMD::multicolvar::AtomValuePack | inline |
AtomValuePack(MultiValue &vals, MultiColvarBase const *mcolv) | PLMD::multicolvar::AtomValuePack | |
cells_required | PLMD::multicolvar::AtomValuePack | private |
getAbsoluteIndex(const unsigned &j) const | PLMD::multicolvar::AtomValuePack | inline |
getIndex(const unsigned &j) const | PLMD::multicolvar::AtomValuePack | inline |
getNumberOfAtoms() const | PLMD::multicolvar::AtomValuePack | inline |
getNumberOfDerivatives() const | PLMD::multicolvar::AtomValuePack | inline |
getPosition(const unsigned &) | PLMD::multicolvar::AtomValuePack | inline |
getUnderlyingMultiValue() | PLMD::multicolvar::AtomValuePack | inline |
getValue(const unsigned &) const | PLMD::multicolvar::AtomValuePack | inline |
indices | PLMD::multicolvar::AtomValuePack | private |
LocalAverage class | PLMD::multicolvar::AtomValuePack | friend |
MultiColvarBase class | PLMD::multicolvar::AtomValuePack | friend |
myatoms | PLMD::multicolvar::AtomValuePack | private |
mycolv | PLMD::multicolvar::AtomValuePack | private |
myvals | PLMD::multicolvar::AtomValuePack | private |
natoms | PLMD::multicolvar::AtomValuePack | private |
setAtom(const unsigned &j, const unsigned &ind) | PLMD::multicolvar::AtomValuePack | inline |
setAtomIndex(const unsigned &j, const unsigned &ind) | PLMD::multicolvar::AtomValuePack | inline |
setIndex(const unsigned &, const unsigned &) | PLMD::multicolvar::AtomValuePack | inline |
setNumberOfAtoms(const unsigned &) | PLMD::multicolvar::AtomValuePack | inline |
setupAtomsFromLinkCells(const std::vector< unsigned > &cind, const Vector &cpos, const LinkCells &linkcells) | PLMD::multicolvar::AtomValuePack | |
setValue(const unsigned &, const double &) | PLMD::multicolvar::AtomValuePack | inline |
sort_vector | PLMD::multicolvar::AtomValuePack | private |
updateDynamicList() | PLMD::multicolvar::AtomValuePack | inline |
updateUsingIndices() | PLMD::multicolvar::AtomValuePack | |