PLMD::opes::OPESmetad< mode > Member List

This is the complete list of members for PLMD::opes::OPESmetad< mode >, including all inherited members.

Action(const ActionOptions &)PLMD::Actionexplicit
Action(const Action &a)=deletePLMD::Actionprivate
ActionPilot(const ActionOptions &)PLMD::ActionPilotexplicit
ActionWithArguments(const ActionOptions &)PLMD::ActionWithArgumentsexplicit
ActionWithValue(const ActionOptions &ao)PLMD::ActionWithValueexplicit
activate()PLMD::Actionvirtual
activePLMD::Actionprivate
adaptive_counter_PLMD::opes::OPESmetad< mode >private
adaptive_sigma_PLMD::opes::OPESmetad< mode >private
adaptive_sigma_stride_PLMD::opes::OPESmetad< mode >private
addComponent(const std::string &name)PLMD::ActionWithValue
addComponentWithDerivatives(const std::string &name)PLMD::ActionWithValue
addDependency(Action *)PLMD::Action
addForcesOnArguments(const std::vector< double > &forces)PLMD::ActionWithArguments
addKernel(const double, const std::vector< double > &, const std::vector< double > &)PLMD::opes::OPESmetad< mode >private
addKernel(const double, const std::vector< double > &, const std::vector< double > &, const double)PLMD::opes::OPESmetad< mode >private
addValue()PLMD::ActionWithValue
addValueWithDerivatives()PLMD::ActionWithValue
afterPLMD::Actionprivate
apply() overridePLMD::bias::Biasvirtual
argumentsPLMD::ActionWithArgumentsprivate
av_cv_PLMD::opes::OPESmetad< mode >private
av_M2_PLMD::opes::OPESmetad< mode >private
beforeUpdate()PLMD::Actioninlinevirtual
Bias(const ActionOptions &ao)PLMD::bias::Biasexplicit
bias_prefactor_PLMD::opes::OPESmetad< mode >private
biasfactor_PLMD::opes::OPESmetad< mode >private
bringBackInPbc(int i, double d1) constPLMD::ActionWithArgumentsinline
calc_work_PLMD::opes::OPESmetad< mode >private
calculate() overridePLMD::opes::OPESmetad< mode >virtual
calculateFromPDB(const PDB &)PLMD::Action
PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::Actionvirtual
PLMD::ActionWithArguments::calculateNumericalDerivatives(ActionWithValue *a=NULL) overridePLMD::ActionWithArgumentsvirtual
checkFieldsAllowed()PLMD::ActionWithValueinlinevirtual
checkNeedsGradients() constPLMD::Actioninlinevirtual
PLMD::checkNumericalDerivatives() constPLMD::Actioninlinevirtual
PLMD::ActionWithValue::checkNumericalDerivatives() const overridePLMD::ActionWithValueinlinevirtual
checkRead()PLMD::Action
checkUpdate() constPLMD::Action
cite(const std::string &s)PLMD::Action
clearDependencies()PLMD::Action
clearDerivatives()PLMD::ActionWithValuevirtual
clearInputForces()PLMD::ActionWithValue
clearOptions()PLMD::Actionvirtual
commPLMD::Action
componentIsNotPeriodic(const std::string &name)PLMD::ActionWithValue
componentIsPeriodic(const std::string &name, const std::string &min, const std::string &max)PLMD::ActionWithValue
componentsAreNotOptional(Keywords &keys)PLMD::ActionWithValuestatic
copyOutput(const std::string &name) constPLMD::ActionWithValue
copyOutput(const unsigned &n) constPLMD::ActionWithValue
counter_PLMD::opes::OPESmetad< mode >private
cutoff2_PLMD::opes::OPESmetad< mode >private
deactivate()PLMD::Actioninlinevirtual
delta_kernels_PLMD::opes::OPESmetad< mode >private
Dependencies typedefPLMD::Action
difference(int, double, double) constPLMD::ActionWithArgumentsinline
doCheckPointPLMD::Actionprivate
doNotCalculateDerivatives() constPLMD::ActionWithValueinlinevirtual
dumpStateToFile()PLMD::opes::OPESmetad< mode >private
epsilon_PLMD::opes::OPESmetad< mode >private
error(const std::string &msg) constPLMD::Action
evaluateKernel(const kernel &, const std::vector< double > &) constPLMD::opes::OPESmetad< mode >inlineprivate
evaluateKernel(const kernel &, const std::vector< double > &, std::vector< double > &, std::vector< double > &)PLMD::opes::OPESmetad< mode >inlineprivate
excluded_region_PLMD::opes::OPESmetad< mode >private
exists(const std::string &name) constPLMD::ActionWithValue
exit(int c=0)PLMD::Action
expandArgKeywordInPDB(const PDB &pdb)PLMD::ActionWithArgumentsprotected
extra_biases_PLMD::opes::OPESmetad< mode >private
fclose(FILE *fp)PLMD::Action
fflush()PLMD::Action
filesPLMD::Action
fixed_sigma_PLMD::opes::OPESmetad< mode >private
fopen(const char *path, const char *mode)PLMD::Action
getArgument(const unsigned n) constPLMD::ActionWithArgumentsinline
getArguments() constPLMD::ActionWithArgumentsinlinevirtual
getComponent(const std::string &name) constPLMD::ActionWithValueprivate
getComponentsList() constPLMD::ActionWithValue
getComponentsVector() constPLMD::ActionWithValue
getCPT() constPLMD::Action
getDependencies() constPLMD::Actioninline
getDocumentation() constPLMD::Actionvirtual
getExchangeStep() constPLMD::Action
getKeyword(const std::string &key)PLMD::Action
getLabel() constPLMD::Actioninline
getMergeableKernel(const std::vector< double > &, const unsigned)PLMD::opes::OPESmetad< mode >private
getName() constPLMD::Actioninline
getNumberOfArguments() constPLMD::ActionWithArgumentsinlinevirtual
getNumberOfComponents() constPLMD::ActionWithValueinline
getNumberOfDerivatives() overridePLMD::bias::Biasinlinevirtual
getOutputQuantity(const unsigned j) constPLMD::ActionWithValueinline
getOutputQuantity(const std::string &name) constPLMD::ActionWithValueinline
getPntrToArgument(const unsigned n)PLMD::ActionWithArgumentsinline
getPntrToComponent(int i)PLMD::ActionWithValueprotected
getPntrToComponent(const std::string &name)PLMD::ActionWithValueprotected
getPntrToValue()PLMD::ActionWithValueprotected
getProbAndDerivatives(const std::vector< double > &, std::vector< double > &)PLMD::opes::OPESmetad< mode >private
getProjection(unsigned i, unsigned j) constPLMD::ActionWithArguments
getRestart() constPLMD::Actioninline
getStep() constPLMD::Action
getStride() constPLMD::ActionPilot
getTime() constPLMD::Action
getTimeStep() constPLMD::Action
interpretArgumentList(const std::vector< std::string > &c, std::vector< Value * > &arg)PLMD::ActionWithArguments
isActive() constPLMD::Actioninline
isFirstStep_PLMD::opes::OPESmetad< mode >private
isOptionOn(const std::string &s) constPLMD::Actioninline
kbt_PLMD::opes::OPESmetad< mode >private
KDEnorm_PLMD::opes::OPESmetad< mode >private
kernels_PLMD::opes::OPESmetad< mode >private
kernelsOfile_PLMD::opes::OPESmetad< mode >private
keywordsPLMD::Action
labelPLMD::Actionprivate
linePLMD::Actionprivate
lockRequestArgumentsPLMD::ActionWithArgumentsprivate
PLMD::lockRequests()PLMD::Actioninlinevirtual
PLMD::ActionWithArguments::lockRequests() overridePLMD::ActionWithArgumentsinlinevirtual
logPLMD::Action
mergeKernels(kernel &, const kernel &)PLMD::opes::OPESmetad< mode >inlineprivate
multi_sim_commPLMD::Action
namePLMD::Actionprivate
ncv_PLMD::opes::OPESmetad< mode >private
nlist_PLMD::opes::OPESmetad< mode >private
nlist_center_PLMD::opes::OPESmetad< mode >private
nlist_dev2_PLMD::opes::OPESmetad< mode >private
nlist_index_PLMD::opes::OPESmetad< mode >private
nlist_pace_reset_PLMD::opes::OPESmetad< mode >private
nlist_param_PLMD::opes::OPESmetad< mode >private
nlist_steps_PLMD::opes::OPESmetad< mode >private
nlist_update_PLMD::opes::OPESmetad< mode >private
no_Zed_PLMD::opes::OPESmetad< mode >private
noAnalyticalDerivatives(Keywords &keys)PLMD::ActionWithValuestatic
noderivPLMD::ActionWithValueprivate
numericalDerivativesPLMD::ActionWithValueprivate
NumOMP_PLMD::opes::OPESmetad< mode >private
NumParallel_PLMD::opes::OPESmetad< mode >private
NumWalkers_PLMD::opes::OPESmetad< mode >private
old_KDEnorm_PLMD::opes::OPESmetad< mode >private
onStep() constPLMD::ActionPilotvirtual
operator=(const Action &a)=deletePLMD::Actionprivate
OPESmetad(const ActionOptions &)PLMD::opes::OPESmetad< mode >explicit
optionsPLMD::Actionprivate
outputForcesPLMD::bias::Biasprivate
parse(const std::string &key, T &t)PLMD::Action
parseArgumentList(const std::string &key, std::vector< Value * > &args)PLMD::ActionWithArguments
parseArgumentList(const std::string &key, int i, std::vector< Value * > &args)PLMD::ActionWithArguments
parseFlag(const std::string &key, bool &t)PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)PLMD::Action
plumedPLMD::Action
prepare()PLMD::Actionvirtual
rank_PLMD::opes::OPESmetad< mode >private
readAtomsFromPDB(const PDB &)PLMD::Actioninlinevirtual
recursive_merge_PLMD::opes::OPESmetad< mode >private
registerKeywords(Keywords &keys)PLMD::opes::OPESmetad< mode >static
replica_indexPLMD::Actionprivate
requestArguments(const std::vector< Value * > &arg)PLMD::ActionWithArguments
requestExtraDependencies(const std::vector< Value * > &extra)PLMD::ActionWithArguments
restartPLMD::Actionprivate
runFinalJobs()PLMD::Actioninlinevirtual
setBias(double bias)PLMD::bias::Biasinlineprotected
setGradientsIfNeeded()PLMD::ActionWithValue
setNotPeriodic()PLMD::ActionWithValue
setOption(const std::string &s)PLMD::Actionvirtual
setOutputForce(int i, double f)PLMD::bias::Biasinlineprotected
setPeriodic(const std::string &min, const std::string &max)PLMD::ActionWithValue
setStride(const int &n)PLMD::ActionPilot
setValue(const double &d)PLMD::ActionWithValueinlineprotected
setValue(Value *, double)PLMD::ActionWithValue
sigma0_PLMD::opes::OPESmetad< mode >private
sigma_min_PLMD::opes::OPESmetad< mode >private
stateOfile_PLMD::opes::OPESmetad< mode >private
storeOldStates_PLMD::opes::OPESmetad< mode >private
stridePLMD::ActionPilotprivate
stride_PLMD::opes::OPESmetad< mode >private
sum_weights2_PLMD::opes::OPESmetad< mode >private
sum_weights_PLMD::opes::OPESmetad< mode >private
threshold2_PLMD::opes::OPESmetad< mode >private
turnOnDerivatives()PLMD::ActionWithValuevirtual
PLMD::unlockRequests()PLMD::Actioninlinevirtual
PLMD::ActionWithArguments::unlockRequests() overridePLMD::ActionWithArgumentsinlinevirtual
update() overridePLMD::opes::OPESmetad< mode >virtual
update_fromPLMD::Actionprivate
update_untilPLMD::Actionprivate
updateNlist(const std::vector< double > &)PLMD::opes::OPESmetad< mode >private
useCustomisableComponents(Keywords &keys)PLMD::ActionWithValuestatic
useNumericalDerivatives()PLMD::ActionWithValueinline
val_at_cutoff_PLMD::opes::OPESmetad< mode >private
valueBiasPLMD::bias::Biasprivate
valuesPLMD::ActionWithValueprivate
walker_rank_PLMD::opes::OPESmetad< mode >private
warning(const std::string &msg)PLMD::Action
work_PLMD::opes::OPESmetad< mode >private
wStateStride_PLMD::opes::OPESmetad< mode >private
Zed_PLMD::opes::OPESmetad< mode >private
~Action()PLMD::Actionvirtual
~ActionWithArguments()PLMD::ActionWithArgumentsinlinevirtual
~ActionWithValue()PLMD::ActionWithValue