Classes
Classes providing input directives

Classes which implement directive that we used in the plumed input file. More...

Classes

class  PLMD::bias::ABMD
 Provides the keyword ABMD More...
 
class  PLMD::mapping::AdaptivePath
 Provides the keyword ADAPTIVE_PATH More...
 
class  PLMD::multicolvar::AlphaBeta
 Provides the keyword ALPHABETA More...
 
class  PLMD::secondarystructure::AlphaRMSD
 Provides the keyword ALPHARMSD More...
 
class  PLMD::colvar::Angle
 Provides the keyword ANGLE More...
 
class  PLMD::multicolvar::Angles
 Provides the keyword ANGLES More...
 
class  ANN
 Provides the keyword ANN More...
 
class  PLMD::secondarystructure::AntibetaRMSD
 Provides the keyword ANTIBETARMSD More...
 
class  PLMD::analysis::Average
 Provides the keyword AVERAGE More...
 
class  PLMD::ves::BF_Chebyshev
 Provides the keyword BF_CHEBYSHEV More...
 
class  PLMD::ves::BF_Combined
 Provides the keyword BF_COMBINED More...
 
class  PLMD::ves::BF_Cosine
 Provides the keyword BF_COSINE More...
 
class  PLMD::ves::BF_CubicBsplines
 Provides the keyword BF_CUBIC_B_SPLINES More...
 
class  PLMD::ves::BF_Custom
 Provides the keyword BF_CUSTOM More...
 
class  PLMD::ves::BF_Fourier
 Provides the keyword BF_FOURIER More...
 
class  PLMD::ves::BF_Gaussians
 Provides the keyword BF_GAUSSIANS More...
 
class  PLMD::ves::BF_Legendre
 Provides the keyword BF_LEGENDRE More...
 
class  PLMD::ves::BF_Powers
 Provides the keyword BF_POWERS More...
 
class  PLMD::ves::BF_Sine
 Provides the keyword BF_SINE More...
 
class  PLMD::ves::BF_Wavelets
 Provides the keyword BF_WAVELETS More...
 
class  PLMD::bias::BiasValue
 Provides the keyword BIASVALUE More...
 
class  PLMD::crystallization::BondOrientation
 Provides the keyword BOND_DIRECTIONS More...
 
class  PLMD::multicolvar::Bridge
 Provides the keyword BRIDGE More...
 
class  PLMD::isdb::Caliber
 Provides the keyword CALIBER More...
 
class  PLMD::colvar::Cell
 Provides the keyword CELL More...
 
class  PLMD::vatom::Center
 Provides the keyword CENTER More...
 
class  PLMD::multicolvar::CenterOfMultiColvar
 Provides the keyword CENTER_OF_MULTICOLVAR More...
 
class  PLMD::dimred::ClassicalMultiDimensionalScaling
 Provides the keyword CLASSICAL_MDS More...
 
class  PLMD::adjmat::ClusterDiameter
 Provides the keyword CLUSTER_DIAMETER More...
 
class  PLMD::adjmat::ClusterDistribution
 Provides the keyword CLUSTER_DISTRIBUTION More...
 
class  PLMD::adjmat::ClusterProperties
 Provides the keyword CLUSTER_PROPERTIES More...
 
class  PLMD::adjmat::ClusterSize
 Provides the keyword CLUSTER_NATOMS More...
 
class  PLMD::adjmat::ClusterWithSurface
 Provides the keyword CLUSTER_WITHSURFACE More...
 
class  PLMD::colvar::ColvarFake
 Provides the keyword FAKE More...
 
class  PLMD::function::Combine
 Provides the keyword COMBINE More...
 
class  PLMD::analysis::Committor
 Provides the keyword COMMITTOR More...
 
class  PLMD::colvar::Constant
 Provides the keyword CONSTANT More...
 
class  PLMD::adjmat::ContactAlignedMatrix
 Provides the keyword ALIGNED_MATRIX More...
 
class  PLMD::colvar::ContactMap
 Provides the keyword CONTACTMAP More...
 
class  PLMD::adjmat::ContactMatrix
 Provides the keyword CONTACT_MATRIX More...
 
class  PLMD::gridtools::ConvertToFES
 Provides the keyword CONVERT_TO_FES More...
 
class  PLMD::colvar::Coordination
 Provides the keyword COORDINATION More...
 
class  PLMD::multicolvar::CoordinationNumbers
 Provides the keyword COORDINATIONNUMBER More...
 
class  PLMD::isdb::CS2Backbone
 Provides the keyword CS2BACKBONE More...
 
class  PLMD::function::Custom
 Provides the keyword CUSTOM More...
 
class  PLMD::generic::Debug
 Provides the keyword DEBUG More...
 
class  PLMD::multicolvar::Density
 Provides the keyword DENSITY More...
 
class  PLMD::adjmat::DFSClustering
 Provides the keyword DFSCLUSTERING More...
 
class  PLMD::colvar::DHEnergy
 Provides the keyword DHENERGY More...
 
class  PLMD::multicolvar::DihedralCorrelation
 Provides the keyword DIHCOR More...
 
class  PLMD::colvar::Dimer
 Provides the keyword <a href="../../user-doc/html/_"_d_i_m_e_r.html"> "DIMER More...
 
class  PLMD::colvar::Dipole
 Provides the keyword DIPOLE More...
 
class  PLMD::colvar::Distance
 Provides the keyword DISTANCE More...
 
class  PLMD::multicolvar::DistanceFromContour
 Provides the keyword DISTANCE_FROM_CONTOUR More...
 
class  PLMD::multicolvar::Distances
 Provides the keyword DISTANCES More...
 
class  PLMD::colvar::DRMSD
 Provides the keyword DRMSD More...
 
class  PLMD::generic::DumpAtoms
 Provides the keyword DUMPATOMS More...
 
class  PLMD::gridtools::DumpCube
 Provides the keyword DUMPCUBE More...
 
class  PLMD::generic::DumpDerivatives
 Provides the keyword DUMPDERIVATIVES More...
 
class  PLMD::generic::DumpForces
 Provides the keyword DUMPFORCES More...
 
class  PLMD::adjmat::DumpGraph
 Provides the keyword DUMPGRAPH More...
 
class  PLMD::gridtools::DumpGrid
 Provides the keyword DUMPGRID More...
 
class  PLMD::generic::DumpMassCharge
 Provides the keyword DUMPMASSCHARGE More...
 
class  PLMD::multicolvar::DumpMultiColvar
 Provides the keyword DUMPMULTICOLVAR More...
 
class  PLMD::generic::DumpProjections
 Provides the keyword DUMPPROJECTIONS More...
 
class  DynamicReferenceRestraining
 Provides the keyword <a href="../../user-doc/html/_"_d_r_r.html"> "DRR More...
 
class  PLMD::opes::ECVcustom
 Provides the keyword ECV_CUSTOM More...
 
class  PLMD::opes::ECVlinear
 Provides the keyword ECV_LINEAR More...
 
class  PLMD::opes::ECVmultiThermal
 Provides the keyword ECV_MULTITHERMAL More...
 
class  PLMD::opes::ECVmultiThermalBaric
 Provides the keyword ECV_MULTITHERMAL_MULTIBARIC More...
 
class  PLMD::opes::ECVumbrellasFile
 Provides the keyword ECV_UMBRELLAS_FILE More...
 
class  PLMD::opes::ECVumbrellasLine
 Provides the keyword ECV_UMBRELLAS_LINE More...
 
class  PLMD::eds::EDS
 Provides the keyword <a href="../../user-doc/html/_"_e_d_s.html"> "EDS More...
 
class  PLMD::colvar::EEFSolv
 Provides the keyword EEFSOLV More...
 
class  PLMD::generic::EffectiveEnergyDrift
 Provides the keyword EFFECTIVE_ENERGY_DRIFT More...
 
class  PLMD::isdb::EMMI
 Provides the keyword EMMI More...
 
class  PLMD::generic::EndPlumed
 Provides the keyword ENDPLUMED More...
 
class  PLMD::colvar::Energy
 Provides the keyword ENERGY More...
 
class  PLMD::function::Ensemble
 Provides the keyword ENSEMBLE More...
 
class  PLMD::crystallization::EnvironmentSimilarity
 Provides the keyword ENVIRONMENTSIMILARITY More...
 
class  PLMD::colvar::ERMSD
 Provides the keyword ERMSD More...
 
class  PLMD::analysis::EuclideanDissimilarityMatrix
 Provides the keyword EUCLIDEAN_DISSIMILARITIES More...
 
class  PLMD::bias::ExtendedLagrangian
 Provides the keyword EXTENDED_LAGRANGIAN More...
 
class  PLMD::bias::External
 Provides the keyword EXTERNAL More...
 
class  PLMD::colvar::ExtraCV
 Provides the keyword EXTRACV More...
 
class  PLMD::analysis::FarthestPointSampling
 Provides the keyword LANDMARK_SELECT_FPS More...
 
class  PLMD::crystallization::Fccubic
 Provides the keyword FCCUBIC More...
 
class  PLMD::multicolvar::FilterBetween
 Provides the keyword MFILTER_BETWEEN More...
 
class  PLMD::multicolvar::FilterLess
 Provides the keyword MFILTER_LESS More...
 
class  PLMD::multicolvar::FilterMore
 Provides the keyword MFILTER_MORE More...
 
class  PLMD::gridtools::FindContour
 Provides the keyword FIND_CONTOUR More...
 
class  PLMD::gridtools::FindContourSurface
 Provides the keyword FIND_CONTOUR_SURFACE More...
 
class  PLMD::gridtools::FindSphericalContour
 Provides the keyword FIND_SPHERICAL_CONTOUR More...
 
class  PLMD::fisst::FISST
 Provides the keyword FISST More...
 
class  PLMD::generic::FitToTemplate
 Provides the keyword FIT_TO_TEMPLATE More...
 
class  PLMD::vatom::FixedAtom
 Provides the keyword FIXEDATOM More...
 
class  PLMD::generic::Flush
 Provides the keyword FLUSH More...
 
class  PLMD::gridtools::FourierTransform
 Provides the keyword FOURIER_TRANSFORM More...
 
class  PLMD::isdb::FretEfficiency
 Provides the keyword FRET More...
 
class  PLMD::function::FuncPathGeneral
 Provides the keyword <a href="../../user-doc/html/_"_f_u_n_c_p_a_t_h_g_e_n_e_r_a_l.html"> "FUNCPATHGENERAL More...
 
class  PLMD::function::FuncPathMSD
 Provides the keyword FUNCPATHMSD More...
 
class  PLMD::function::FuncSumHills
 Provides the keyword FUNCSUMHILLS More...
 
class  PLMD::funnel::Funnel
 Provides the keyword FUNNEL More...
 
class  PLMD::funnel::FUNNEL_PS
 Provides the keyword FUNNEL_PS More...
 
class  PLMD::colvar::GHBFIX
 Provides the keyword GHBFIX More...
 
class  PLMD::vatom::Ghost
 Provides the keyword GHOST More...
 
class  PLMD::crystallization::Gradient
 Provides the keyword GRADIENT More...
 
class  PLMD::gridtools::GridToXYZ
 Provides the keyword GRID_TO_XYZ More...
 
class  PLMD::generic::Group
 Provides the keyword GROUP More...
 
class  PLMD::colvar::Gyration
 Provides the keyword GYRATION More...
 
class  PLMD::adjmat::HBondMatrix
 Provides the keyword HBOND_MATRIX More...
 
class  PLMD::pamm::HBPammHydrogens
 Provides the keyword HBPAMM_SH More...
 
class  PLMD::pamm::HBPammMatrix
 Provides the keyword HBPAMM_MATRIX More...
 
class  PLMD::analysis::Histogram
 Provides the keyword HISTOGRAM More...
 
class  PLMD::generic::Include
 Provides the keyword INCLUDE More...
 
class  PLMD::multicolvar::InPlaneDistances
 Provides the keyword INPLANEDISTANCES More...
 
class  PLMD::gridtools::IntegrateGrid
 Provides the keyword INTEGRATE_GRID More...
 
class  PLMD::crystallization::InterMolecularTorsions
 Provides the keyword INTERMOLECULARTORSIONS More...
 
class  PLMD::gridtools::InterpolateGrid
 Provides the keyword INTERPOLATE_GRID More...
 
class  PLMD::isdb::JCoupling
 Provides the keyword <a href="../../user-doc/html/_"_j_c_o_u_p_l_i_n_g.html"> "JCOUPLING More...
 
class  PLMD::analysis::LandmarkStaged
 Provides the keyword LANDMARK_SELECT_STAGED More...
 
class  PLMD::setup::Load
 Provides the keyword LOAD More...
 
class  LOCAL_Q3
 Provides the keyword LOCAL_Q3 More...
 
class  LOCAL_Q4
 Provides the keyword LOCAL_Q4 More...
 
class  LOCAL_Q6
 Provides the keyword LOCAL_Q6 More...
 
class  PLMD::multicolvar::LocalAverage
 Provides the keyword LOCAL_AVERAGE More...
 
class  PLMD::function::LocalEnsemble
 Provides the keyword LOCALENSEMBLE More...
 
class  PLMD::logmfd::LogMFD
 class for LogMFD parameters, variables and subroutines. More...
 
class  PLMD::maze::Loss
 Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__l_o_s_s.html"> "MAZE_LOSS More...
 
class  PLMD::manyrestraints::LWalls
 Provides the keyword LWALLS More...
 
class  PLMD::bias::LWalls
 Provides the keyword LOWER_WALLS More...
 
class  PLMD::adjmat::MatrixColumnSums
 Provides the keyword COLUMNSUMS More...
 
class  PLMD::adjmat::MatrixRowSums
 Provides the keyword ROWSUMS More...
 
class  PLMD::bias::MaxEnt
 Provides the keyword MAXENT More...
 
class  PLMD::maze::Memetic
 Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__m_e_m_e_t_i_c__s_a_m_p_l_i_n_g.html"> "MAZE_MEMETIC_SAMPLING More...
 
class  PLMD::bias::MetaD
 Provides the keyword METAD More...
 
class  PLMD::isdb::Metainference
 Provides the keyword METAINFERENCE More...
 
class  PLMD::crystallization::MoleculeOrientation
 Provides the keyword MOLECULES More...
 
class  PLMD::crystallization::MoleculePlane
 Provides the keyword PLANES More...
 
class  MolInfo
 Provides the keyword MOLINFO More...
 
class  PLMD::bias::MovingRestraint
 Provides the keyword MOVINGRESTRAINT More...
 
class  PLMD::multicolvar::MultiColvarCombine
 Provides the keyword MCOLV_COMBINE More...
 
class  PLMD::multicolvar::MultiColvarDensity
 Provides the keyword MULTICOLVARDENS More...
 
class  PLMD::multicolvar::MultiColvarProduct
 Provides the keyword MCOLV_PRODUCT More...
 
class  PLMD::colvar::MultiRMSD
 Provides the keyword MULTI_RMSD More...
 
class  PLMD::isdb::NOE
 Provides the keyword NOE More...
 
class  PLMD::multicolvar::NumberOfLinks
 Provides the keyword NLINKS More...
 
class  PLMD::opes::OPESexpanded
 Provides the keyword OPES_EXPANDED More...
 
class  OPESmetad_c
 Provides the keyword OPES_METAD More...
 
class  OPESmetad_e
 Provides the keyword OPES_METAD_EXPLORE More...
 
class  PLMD::ves::Opt_Adam
 Provides the keyword OPT_ADAM More...
 
class  PLMD::ves::Opt_BachAveragedSGD
 Provides the keyword OPT_AVERAGED_SGD More...
 
class  PLMD::ves::Opt_Dummy
 Provides the keyword OPT_DUMMY More...
 
class  PLMD::ves::Opt_RobbinsMonroSGD
 Provides the keyword OPT_ROBBINS_MONRO_SGD More...
 
class  PLMD::maze::OptimizerBias
 Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__o_p_t_i_m_i_z_e_r__b_i_a_s.html"> "MAZE_OPTIMIZER_BIAS More...
 
class  PLMD::ves::OutputBasisFunctions
 Provides the keyword VES_OUTPUT_BASISFUNCTIONS More...
 
class  PLMD::adjmat::OutputCluster
 Provides the keyword OUTPUT_CLUSTER More...
 
class  PLMD::analysis::OutputColvarFile
 Provides the keyword OUTPUT_ANALYSIS_DATA_TO_COLVAR More...
 
class  PLMD::ves::OutputFesBias
 Provides the keyword VES_OUTPUT_FES More...
 
class  PLMD::dimred::OutputPCAProjection
 Provides the keyword OUTPUT_PCA_PROJECTION More...
 
class  PLMD::analysis::OutputPDBFile
 Provides the keyword OUTPUT_ANALYSIS_DATA_TO_PDB More...
 
class  PLMD::ves::OutputTargetDistribution
 Provides the keyword VES_OUTPUT_TARGET_DISTRIBUTION More...
 
class  PLMD::pamm::PAMM
 Provides the keyword PAMM More...
 
class  PLMD::secondarystructure::ParabetaRMSD
 Provides the keyword PARABETARMSD More...
 
class  PLMD::mapping::Path
 Provides the keyword PATH More...
 
class  PLMD::colvar::PathMSD
 Provides the keyword PATHMSD More...
 
class  PLMD::bias::PBMetaD
 Provides the keyword PBMETAD More...
 
class  PLMD::dimred::PCA
 Provides the keyword PCA More...
 
class  PLMD::colvar::PCARMSD
 Provides the keyword PCARMSD More...
 
class  PLMD::mapping::PCAVars
 Provides the keyword PCAVARS More...
 
class  PLMD::function::Piecewise
 Provides the keyword PIECEWISE More...
 
class  PLMD::piv::PIV
 Provides the keyword PIV More...
 
class  PLMD::generic::Plumed
 Provides the keyword PLUMED More...
 
class  PLMD::crystallization::PolymerAngles
 Provides the keyword POLYMER_ANGLES More...
 
class  PLMD::colvar::Position
 Provides the keyword POSITION More...
 
class  PLMD::isdb::PRE
 Provides the keyword PRE More...
 
class  PLMD::generic::Print
 Provides the keyword PRINT More...
 
class  PLMD::analysis::PrintDissimilarityMatrix
 Provides the keyword PRINT_DISSIMILARITY_MATRIX More...
 
class  PLMD::colvar::ProjectionOnAxis
 Provides the keyword PROJECTION_ON_AXIS More...
 
class  PLMD::dimred::ProjectNonLandmarkPoints
 Provides the keyword PROJECT_ALL_ANALYSIS_DATA More...
 
class  PLMD::mapping::PropertyMap
 Provides the keyword GPROPERTYMAP More...
 
class  PLMD::colvar::PropertyMap
 Provides the keyword PROPERTYMAP More...
 
class  PLMD::colvar::Puckering
 Provides the keyword PUCKERING More...
 
class  PLMD::crystallization::Q3
 Provides the keyword Q3 More...
 
class  PLMD::crystallization::Q4
 Provides the keyword Q4 More...
 
class  PLMD::crystallization::Q6
 Provides the keyword Q6 More...
 
class  PLMD::maze::Random_Acceleration_MD
 Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__r_a_n_d_o_m__a_c_c_e_l_e_r_a_t_i_o_n__m_d.html"> "MAZE_RANDOM_ACCELERATION_MD More...
 
class  PLMD::maze::Random_Walk
 Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__r_a_n_d_o_m__w_a_l_k.html"> "MAZE_RANDOM_WALK More...
 
class  PLMD::generic::RandomExchanges
 Provides the keyword RANDOM_EXCHANGES More...
 
class  PLMD::isdb::RDC
 Provides the keyword RDC More...
 
class  PLMD::generic::Read
 Provides the keyword READ More...
 
class  PLMD::analysis::ReadAnalysisFrames
 Provides the keyword COLLECT_FRAMES More...
 
class  PLMD::analysis::ReadDissimilarityMatrix
 Provides the keyword READ_DISSIMILARITY_MATRIX More...
 
class  PLMD::isdb::Rescale
 Provides the keyword RESCALE More...
 
class  PLMD::analysis::ReselectLandmarks
 Provides the keyword RESELECT_LANDMARKS More...
 
class  PLMD::generic::ResetCell
 Provides the keyword RESET_CELL More...
 
class  PLMD::setup::Restart
 Provides the keyword RESTART More...
 
class  PLMD::bias::Restraint
 Provides the keyword RESTRAINT More...
 
class  PLMD::bias::ReweightBias
 Provides the keyword REWEIGHT_BIAS More...
 
class  PLMD::bias::ReweightMetad
 Provides the keyword REWEIGHT_METAD More...
 
class  PLMD::bias::ReweightTemperaturePressure
 Provides the keyword REWEIGHT_TEMP_PRESS More...
 
class  PLMD::bias::ReweightWham
 Provides the keyword REWEIGHT_WHAM More...
 
class  PLMD::colvar::RMSD
 Provides the keyword RMSD More...
 
class  PLMD::s2cm::S2ContactModel
 Provides the keyword S2CM More...
 
class  PLMD::sasa::SASA_HASEL
 Provides the keyword SASA_HASEL More...
 
class  PLMD::sasa::SASA_LCPO
 Provides the keyword SASA_LCPO More...
 
class  PLMD::isdb::SAXS
 Provides the keyword SAXS More...
 
class  PLMD::isdb::Select
 Provides the keyword SELECT More...
 
class  PLMD::isdb::Selector
 Provides the keyword SELECTOR More...
 
class  PLMD::analysis::SelectRandomFrames
 Provides the keyword LANDMARK_SELECT_RANDOM More...
 
class  PLMD::analysis::SelectWithStride
 Provides the keyword LANDMARK_SELECT_STRIDE More...
 
class  PLMD::crystallization::SimpleCubic
 Provides the keyword SIMPLECUBIC More...
 
class  PLMD::maze::Simulated_Annealing
 Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__s_i_m_u_l_a_t_e_d__a_n_n_e_a_l_i_n_g.html"> "MAZE_SIMULATED_ANNEALING More...
 
class  PLMD::dimred::SketchMap
 Provides the keyword SKETCH_MAP More...
 
class  PLMD::dimred::SketchMapConjGrad
 Provides the keyword SKETCHMAP_CONJGRAD More...
 
class  PLMD::dimred::SketchMapPointwise
 Provides the keyword SKETCHMAP_POINTWISE More...
 
class  PLMD::dimred::SketchMapRead
 Provides the keyword SKETCHMAP_READ More...
 
class  PLMD::dimred::SketchMapSmacof
 Provides the keyword SKETCHMAP_SMACOF More...
 
class  PLMD::crystallization::SMAC
 Provides the keyword SMAC More...
 
class  PLMD::adjmat::SMACMatrix
 Provides the keyword SMAC_MATRIX More...
 
class  PLMD::dimred::SmacofMDS
 Provides the keyword SMACOF_MDS More...
 
class  PLMD::function::Sort
 Provides the keyword SORT More...
 
class  PLMD::adjmat::Sprint
 Provides the keyword SPRINT More...
 
class  PLMD::function::Stats
 Provides the keyword STATS More...
 
class  PLMD::maze::Steered_MD
 Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__s_t_e_e_r_e_d__m_d.html"> "MAZE_STEERED_MD More...
 
class  PLMD::function::Target
 Provides the keyword TARGET More...
 
class  PLMD::ves::TD_Chi
 Provides the keyword TD_CHI More...
 
class  PLMD::ves::TD_ChiSquared
 Provides the keyword TD_CHISQUARED More...
 
class  PLMD::ves::TD_Custom
 Provides the keyword TD_CUSTOM More...
 
class  PLMD::ves::TD_Exponential
 Provides the keyword TD_EXPONENTIAL More...
 
class  PLMD::ves::TD_ExponentiallyModifiedGaussian
 Provides the keyword TD_EXPONENTIALLY_MODIFIED_GAUSSIAN More...
 
class  PLMD::ves::TD_Gaussian
 Provides the keyword TD_GAUSSIAN More...
 
class  PLMD::ves::TD_GeneralizedExtremeValue
 Provides the keyword TD_GENERALIZED_EXTREME_VALUE More...
 
class  PLMD::ves::TD_GeneralizedNormal
 Provides the keyword TD_GENERALIZED_NORMAL More...
 
class  PLMD::ves::TD_Grid
 Provides the keyword TD_GRID More...
 
class  PLMD::ves::TD_LinearCombination
 Provides the keyword TD_LINEAR_COMBINATION More...
 
class  PLMD::ves::TD_Multicanonical
 Provides the keyword TD_MULTICANONICAL More...
 
class  PLMD::ves::TD_MultithermalMultibaric
 Provides the keyword TD_MULTITHERMAL_MULTIBARIC More...
 
class  PLMD::ves::TD_ProductCombination
 Provides the keyword TD_PRODUCT_COMBINATION More...
 
class  PLMD::ves::TD_ProductDistribution
 Provides the keyword TD_PRODUCT_DISTRIBUTION More...
 
class  PLMD::ves::TD_Uniform
 Provides the keyword TD_UNIFORM More...
 
class  PLMD::ves::TD_VonMises
 Provides the keyword TD_VONMISES More...
 
class  PLMD::ves::TD_WellTempered
 Provides the keyword TD_WELLTEMPERED More...
 
class  PLMD::colvar::Template
 Provides the keyword TEMPLATE More...
 
class  PLMD::crystallization::Tetrahedral
 Provides the keyword TETRAHEDRAL More...
 
class  PLMD::generic::Time
 Provides the keyword TIME More...
 
class  PLMD::adjmat::TopologyMatrix
 Provides the keyword TOPOLOGY_MATRIX More...
 
class  PLMD::colvar::Torsion
 Provides the keyword TORSION More...
 
class  PLMD::multicolvar::Torsions
 Provides the keyword TORSIONS More...
 
class  PLMD::setup::Units
 Provides the keyword UNITS More...
 
class  PLMD::generic::UpdateIf
 Provides the keyword UPDATE_IF More...
 
class  PLMD::manyrestraints::UWalls
 Provides the keyword UWALLS More...
 
class  PLMD::bias::UWalls
 Provides the keyword UPPER_WALLS More...
 
class  PLMD::ves::VesDeltaF
 Provides the keyword VES_DELTA_F More...
 
class  PLMD::ves::VesLinearExpansion
 Provides the keyword VES_LINEAR_EXPANSION More...
 
class  PLMD::colvar::Volume
 Provides the keyword VOLUME More...
 
class  PLMD::multicolvar::VolumeAround
 Provides the keyword AROUND More...
 
class  PLMD::multicolvar::VolumeCavity
 Provides the keyword CAVITY More...
 
class  PLMD::multicolvar::VolumeInCylinder
 Provides the keyword INCYLINDER More...
 
class  PLMD::multicolvar::VolumeInEnvelope
 Provides the keyword INENVELOPE More...
 
class  PLMD::multicolvar::VolumeInSphere
 Provides the keyword INSPHERE More...
 
class  PLMD::multicolvar::VolumeTetrapore
 Provides the keyword TETRAHEDRALPORE More...
 
class  PLMD::analysis::WhamHistogram
 Provides the keyword WHAM_HISTOGRAM More...
 
class  PLMD::analysis::WhamWeights
 Provides the keyword WHAM_WEIGHTS More...
 
class  PLMD::generic::WholeMolecules
 Provides the keyword WHOLEMOLECULES More...
 
class  PLMD::generic::WrapAround
 Provides the keyword WRAPAROUND More...
 
class  PLMD::multicolvar::XAngles
 Provides the keyword XANGLES More...
 
class  PLMD::multicolvar::XDistances
 Provides the keyword XDISTANCES More...
 
class  PLMD::multicolvar::XYDistances
 Provides the keyword XYDISTANCES More...
 
class  PLMD::multicolvar::XYTorsion
 Provides the keyword XYTORSIONS More...
 

Detailed Description

Classes which implement directive that we used in the plumed input file.

Most of these classes are only used to provide a new feature which will be available from the plumed input file. As such, they are typically not reused in other places of the code. For this reason, almost all of them are directly provided into an implementation file (.cpp), and have no accociated header file (.h). A notable exceptions is PLMD::SetupMolInfo, which needs to be accessed directly from other classes.

Each of these classes provides one directive for the plumed input file. This list is built automatically based on the PLUMED_REGISTER_ACTION macro.

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