This is part of the analysis module

Print the matrix of dissimilarities between a trajectory of atomic configurations.

Glossary of keywords and components
The data to analyze can be the output from another analysis algorithm
USE_OUTPUT_DATA_FROM use the output of the analysis performed by this object as input to your new analysis object
Compulsory keywords
FILE name of file on which to output the data
STRIDE ( default=0 ) the frequency with which to perform the required analysis and to output the data. The default value of 0 tells plumed to use all the data
SERIAL ( default=off ) do the calculation in serial. Do not use MPI

( default=off ) lower the memory requirements

FMT the format to use for the output of numbers