Public Member Functions
void	parseInput (AdjacencyMatrixBase< TopologyMatrix > *action)

Static Public Member Functions
static void	calculateWeight (const TopologyMatrix &data, const AdjacencyMatrixInput &input, MatrixOutput output)

static void	registerKeywords (Keywords &keys)

Public Attributes
double	binw_mat

double	cell_volume
	The volume of the cells.

SwitchingFunction	cylinder_sw

HistogramBead::KernelType	kerneltype

SwitchingFunction	low_sf

unsigned	maxbins
	The maximum number of bins that will be used This is calculated based on the dmax of the switching functions.

double	sigma

SwitchingFunction	switchingFunction
	switching functions

SwitchingFunction	threshold_switch

Member Function Documentation

◆ calculateWeight()

void PLMD::adjmat::TopologyMatrix::calculateWeight	(	const TopologyMatrix &	data,
		const AdjacencyMatrixInput &	input,
		MatrixOutput	output )

static

◆ parseInput()

void PLMD::adjmat::TopologyMatrix::parseInput ( AdjacencyMatrixBase< TopologyMatrix > * action )

◆ registerKeywords()

void PLMD::adjmat::TopologyMatrix::registerKeywords ( Keywords & keys )

static

Member Data Documentation

◆ binw_mat

double PLMD::adjmat::TopologyMatrix::binw_mat

◆ cell_volume

double PLMD::adjmat::TopologyMatrix::cell_volume

The volume of the cells.

◆ cylinder_sw

SwitchingFunction PLMD::adjmat::TopologyMatrix::cylinder_sw

◆ kerneltype

HistogramBead::KernelType PLMD::adjmat::TopologyMatrix::kerneltype

◆ low_sf

SwitchingFunction PLMD::adjmat::TopologyMatrix::low_sf

◆ maxbins

unsigned PLMD::adjmat::TopologyMatrix::maxbins

The maximum number of bins that will be used This is calculated based on the dmax of the switching functions.

◆ sigma

double PLMD::adjmat::TopologyMatrix::sigma

◆ switchingFunction

SwitchingFunction PLMD::adjmat::TopologyMatrix::switchingFunction

switching functions

◆ threshold_switch

SwitchingFunction PLMD::adjmat::TopologyMatrix::threshold_switch

The documentation for this class was generated from the following file:

adjmat/TopologyMatrix.cpp

Public Member Functions

Static Public Member Functions

Public Attributes