Here is a list of all functions with links to the classes they belong to:

- o -

• OFile() : PLMD::OFile
• Ones() : PLMD::generic::Ones
• onStep() : PLMD::ActionForInterface, PLMD::ActionPilot, PLMD::ActionToPutData, PLMD::DomainDecomposition
• open() : PLMD::FileBase, PLMD::IFile, PLMD::OFile
• OpenMPVars() : PLMD::OpenMP::OpenMPVars
• operator bool() : PLMD::DomainDecomposition::DomainComms, PLMD::FileBase, PLMD::GridBase::AcceleratorHandler, PLMD::TypesafePtr
• operator!=() : PLMD::lepton::ExpressionTreeNode, PLMD::lepton::Operation::AddConstant, PLMD::lepton::Operation::Constant, PLMD::lepton::Operation::Custom, PLMD::lepton::Operation::MultiplyConstant, PLMD::lepton::Operation, PLMD::lepton::Operation::PowerConstant, PLMD::lepton::Operation::Variable
• operator()() : PLMD::colvar::PathMSDBase::imgOrderByDist, PLMD::colvar::PathMSDBase::imgOrderBySimilarity, PLMD::fileDeleter, PLMD::function::FuncPathGeneral::pairordering, PLMD::function::FuncPathMSD::ordering, PLMD::function::FuncPathMSD::pairordering, PLMD::Matrix< T >, PLMD::maze::tls::delete_ptr, PLMD::switchContainers::leptonSwitch::funcAndDeriv, PLMD::TensorTyped< T, n, m >, PLMD::UniformSphericalVector, PLMD::VectorTyped< T, n >, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector
• operator*() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector
• operator*=() : PLMD::Matrix< T >, PLMD::TensorTyped< T, n, m >, PLMD::VectorTyped< T, n >, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector, PLMD::View< T, N >
• operator+() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >, PLMD::TensorTyped< T, n, m >, PLMD::VectorTyped< T, n >, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector
• operator++() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >
• operator+=() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >, PLMD::Matrix< T >, PLMD::TensorTyped< T, n, m >, PLMD::VectorTyped< T, n >, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector, PLMD::View< T, N >
• operator-() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >, PLMD::TensorTyped< T, n, m >, PLMD::VectorTyped< T, n >, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector
• operator--() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >
• operator-=() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >, PLMD::Matrix< T >, PLMD::TensorTyped< T, n, m >, PLMD::VectorTyped< T, n >, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector, PLMD::View< T, N >
• operator->() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >, PLMD::GridBase::AcceleratorHandler
• operator/=() : PLMD::TensorTyped< T, n, m >, PLMD::VectorTyped< T, n >, PLMD::View< T, N >
• operator<<() : PLMD::Exception, PLMD::ExceptionDebug, PLMD::ExceptionError, PLMD::ExceptionRegisterError, PLMD::ExceptionTypeError
• operator<<=() : PLMD::Exception::Throw
• operator=() : PLMD::Action, PLMD::Communicator, PLMD::DLLoader, PLMD::Exception, PLMD::FileBase, PLMD::function::Combine, PLMD::function::Custom, PLMD::gch::detail::allocator_inliner< Allocator, false >, PLMD::gch::detail::allocator_inliner< Allocator, true >, PLMD::gch::detail::allocator_interface< Allocator >, PLMD::gch::detail::inline_storage< T, InlineCapacity >, PLMD::gch::detail::small_vector_base< Allocator, InlineCapacity >, PLMD::gch::detail::small_vector_base< Allocator, InlineCapacity >::stack_temporary, PLMD::gch::detail::small_vector_data< Pointer, SizeT, T, InlineCapacity >, PLMD::gch::detail::small_vector_data< Pointer, SizeT, T, 0 >, PLMD::gch::detail::small_vector_data_base< Pointer, SizeT >, PLMD::gch::small_vector< T, InlineCapacity, Allocator >, PLMD::gch::small_vector_iterator< Pointer, DifferenceType >, PLMD::GridBase::AcceleratorHandler, PLMD::gridtools::EvaluateGridFunction, PLMD::gridtools::MarginalInput, PLMD::HistogramBead, PLMD::lepton::AsmJitRuntimePtr, PLMD::lepton::CompiledExpression, PLMD::lepton::ExpressionProgram, PLMD::lepton::ExpressionTreeNode, PLMD::Matrix< T >, PLMD::matrixtools::OutputProductFunc, PLMD::OpenMP::OpenMPVars, PLMD::pamm::HBPammMatrix, PLMD::PlumedHandle, PLMD::refdist::MatrixProductDiagonalInput, PLMD::secondarystructure::flexibleMemory< T >, PLMD::secondarystructure::SecondaryStructureRMSDInput, PLMD::Stopwatch::Handler, PLMD::Stopwatch, PLMD::Subprocess::Handler, PLMD::switchContainers::leptonSwitch::funcAndDeriv, PLMD::SwitchingFunction, PLMD::symfunc::CylindricalHarmonic, PLMD::symfunc::Fccubic, PLMD::symfunc::SphericalHarmonic, PLMD::symfunc::ThreeBodyGFunctionsInput, PLMD::Tools::CriticalSectionWithKey< Key >::Handler, PLMD::TypesafePtr, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector, PLMD::ves::FermiSwitchingFunction, PLMD::ves::LinearBasisSetExpansion, PLMD::View2D< T, N, M >, PLMD::View< T, N >, PLMD::volumes::VolumeCavity, PLMD::volumes::VolumeInEnvelope, PLMD::volumes::VolumeTetrapore
• operator==() : PLMD::lepton::ExpressionTreeNode, PLMD::lepton::Operation
• operator[]() : PLMD::ColvarOutput::DerivHelper, PLMD::ColvarOutput::VirialHelper, PLMD::gch::small_vector< T, InlineCapacity, Allocator >, PLMD::gch::small_vector_iterator< Pointer, DifferenceType >, PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Const_row, PLMD::MatrixSquareBracketsAccess< T, C, I, J >, PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Row, PLMD::RequiredMatrixElements, PLMD::Tools::FastStringUnorderedMap< T >, PLMD::VectorTyped< T, n >, PLMD::ves::CoeffsVector, PLMD::View2D< T, N, M >, PLMD::View< T, N >, PLMD::volumes::VolumeOutput::RefderHelper
• OPESexpanded() : PLMD::opes::OPESexpanded
• OPESmetad() : PLMD::opes::OPESmetad< mode >
• Opt_Adam() : PLMD::ves::Opt_Adam
• Opt_BachAveragedSGD() : PLMD::ves::Opt_BachAveragedSGD
• Opt_Dummy() : PLMD::ves::Opt_Dummy
• Opt_RobbinsMonroSGD() : PLMD::ves::Opt_RobbinsMonroSGD
• optimalAlignment() : PLMD::RMSD
• optimalAlignment_DDistDRef() : PLMD::RMSD
• optimalAlignment_DDistDRef_Rot_DRotDPos() : PLMD::RMSD
• optimalAlignment_DDistDRef_Rot_DRotDPos_DRotDRef() : PLMD::RMSD
• optimalAlignment_Fit() : PLMD::RMSD
• optimalAlignment_PCA() : PLMD::RMSD
• optimalAlignment_Rot() : PLMD::RMSD
• optimalAlignment_Rot_DRotDRr01() : PLMD::RMSD
• optimalAlignment_SOMA() : PLMD::RMSD
• optimalAlignmentWithCloseStructure() : PLMD::RMSD
• optimize() : PLMD::dimred::ArrangePoints, PLMD::dimred::SMACOF, PLMD::lepton::ParsedExpression, PLMD::maze::Memetic, PLMD::maze::Optimizer, PLMD::maze::Random_Acceleration_MD, PLMD::maze::Random_Walk, PLMD::maze::Simulated_Annealing, PLMD::maze::Steered_MD
• optimizeCoeffs() : PLMD::ves::VesBias
• Optimizer() : PLMD::maze::Optimizer, PLMD::ves::Optimizer
• OptimizerBias() : PLMD::maze::OptimizerBias
• out_of_bounds() : PLMD::maze::Memetic
• OuterProduct() : PLMD::matrixtools::OuterProduct
• OuterProductBase() : PLMD::matrixtools::OuterProductBase< T >
• OutputBasisFunctions() : PLMD::ves::OutputBasisFunctions
• OutputCluster() : PLMD::clusters::OutputCluster
• outputComponentExists() : PLMD::Keywords
• OutputFesBias() : PLMD::ves::OutputFesBias
• OutputTargetDistribution() : PLMD::ves::OutputTargetDistribution
• overrideNat() : PLMD::AtomDistribution, PLMD::fileTraj, PLMD::repliedTrajectory