Here is a list of all variables with links to the classes they belong to:
- f -
- f : PLMD::bias::MovingRestraint, PLMD::DataPassingObjectTyped< T >, PLMD::function::FunctionData< T >, PLMD::function::FunctionWithSingleArgument< T >, PLMD::molfile::md_file
- f_size : PLMD::molfile::trx_hdr, PLMD::xdrfile::t_trnheader
- fa : PLMD::Brent1DRootSearch< FCLASS >, PLMD::Minimise1DBrent< FCLASS >
- fa_max_stride_ : PLMD::bias::MetaD
- fa_min_acceleration_ : PLMD::bias::MetaD
- fa_update_frequency_ : PLMD::bias::MetaD
- fact : PLMD::Random
- fadefact : PLMD::mapping::PathDisplacements
- fake_der : PLMD::F1dim< FCLASS >
- fb : PLMD::Brent1DRootSearch< FCLASS >, PLMD::Minimise1DBrent< FCLASS >
- fbox : PLMD::generic::EffectiveEnergyDrift
- fc : PLMD::contour::DumpContour, PLMD::Minimise1DBrent< FCLASS >
- fcp : PLMD::Subprocess
- fermi_exp_max_ : PLMD::ves::FermiSwitchingFunction
- fermi_lambda_ : PLMD::ves::FermiSwitchingFunction
- fes_file_fmt_ : PLMD::ves::VesBias
- fes_filename_ : PLMD::ves::VesBias
- fes_fileoutput_active_ : PLMD::ves::VesBias
- fes_grid_pntr_ : PLMD::ves::LinearBasisSetExpansion, PLMD::ves::TargetDistribution
- fes_output_active_ : PLMD::ves::Optimizer
- fes_output_stride_ : PLMD::ves::Optimizer
- fes_var_lepton_ref_ : PLMD::ves::TD_Custom
- fes_var_str_ : PLMD::ves::TD_Custom
- fesproj_fileoutput_active_ : PLMD::ves::VesBias
- fesproj_output_active_ : PLMD::ves::Optimizer
- fesproj_output_stride_ : PLMD::ves::Optimizer
- FF_rank : PLMD::isdb::SAXS
- FF_value : PLMD::isdb::SAXS
- FF_value_mixed : PLMD::isdb::SAXS
- FF_value_mixed_D : PLMD::isdb::SAXS
- FF_value_mixed_H : PLMD::isdb::SAXS
- FF_value_solv : PLMD::isdb::SAXS
- FF_value_solv_H : PLMD::isdb::SAXS
- FF_value_vacuum : PLMD::isdb::SAXS
- FF_value_vacuum_D : PLMD::isdb::SAXS
- FF_value_vacuum_H : PLMD::isdb::SAXS
- FFf_value : PLMD::isdb::SAXS
- ffict : PLMD::bias::ExtendedLagrangian, PLMD::logmfd::LogMFD
- fib_increment : PLMD::gridtools::GridCoordinatesObject
- fib_nlist : PLMD::gridtools::GridCoordinatesObject
- fib_offset : PLMD::gridtools::GridCoordinatesObject
- fib_shift : PLMD::gridtools::GridCoordinatesObject
- fict : PLMD::bias::ExtendedLagrangian, PLMD::logmfd::LogMFD
- fict_ave : PLMD::logmfd::LogMFD
- fict_max : PLMD::logmfd::LogMFD
- fict_min : PLMD::logmfd::LogMFD
- fictValue : PLMD::bias::ExtendedLagrangian, PLMD::logmfd::LogMFD
- field_iteration_ : PLMD::ves::CoeffsBase
- field_ncoeffs_total_ : PLMD::ves::CoeffsBase
- field_ndimensions_ : PLMD::ves::CoeffsBase
- field_shape_prefix_ : PLMD::ves::CoeffsBase
- field_time_ : PLMD::ves::CoeffsBase
- field_type_ : PLMD::ves::CoeffsBase
- fieldChanged : PLMD::OFile
- fieldFmt : PLMD::OFile
- fields : PLMD::IFile, PLMD::OFile
- file : PLMD::Exception::Location, PLMD::generic::Committor, PLMD::generic::DumpDerivatives, PLMD::generic::DumpForces, PLMD::generic::DumpMassCharge, PLMD::generic::DumpPDB, PLMD::generic::DumpProjections, PLMD::generic::Print, PLMD::generic::PrintNDX
- filename : PLMD::contour::DumpContour, PLMD::generic::DumpVector, PLMD::generic::Read, PLMD::gridtools::DumpGrid
- filename_extension : PLMD::molfile::molfile_plugin_t
- filenames : PLMD::function::FilesHandler
- filenames_have_iteration_number_ : PLMD::ves::VesBias
- files : PLMD::Action, PLMD::PlumedMain
- finalize : plumed_plumedmain_function_holder_x
- first : PLMD::generic::DumpMassCharge, PLMD::generic::Plumed, PLMD::vatom::Center
- first_bias_ : PLMD::isdb::Rescale
- first_status_ : PLMD::isdb::EMMI
- first_step_ : PLMD::maze::Optimizer
- first_time_ : PLMD::isdb::EMMI, PLMD::isdb::Shadow, PLMD::maze::Optimizer
- first_time_w_ : PLMD::isdb::EMMI
- firstPosClose : PLMD::colvar::PathMSDBase
- firststep : PLMD::ActionForInterface, PLMD::ActionWithValue, PLMD::colvar::RMSDVector, PLMD::contour::FindContour, PLMD::contour::FindContourSurface, PLMD::gridtools::FunctionOfGrid< T >, PLMD::gridtools::InterpolateGrid, PLMD::gridtools::KDE< K, P, G >, PLMD::gridtools::Marginal
- firstStepFlag : PLMD::sasa::SASA_HASEL, PLMD::sasa::SASA_LCPO
- firstTime : PLMD::isdb::Metainference, PLMD::isdb::MetainferenceBase
- firsttime : PLMD::bias::ExtendedLagrangian, PLMD::colvar::CoordinationBase, PLMD::fourier::FourierTransform, PLMD::logmfd::LogMFD, PLMD::s2cm::S2ContactModel
- firstTimeW : PLMD::isdb::Metainference, PLMD::isdb::MetainferenceBase
- fixed : PLMD::ActionToPutData
- fixed_sigma_ : PLMD::opes::OPESmetad< mode >
- fixed_stepsize_ : PLMD::ves::Optimizer
- fixed_width : PLMD::gridtools::KDEHelper< K, P, G >
- flags : PLMD::PDB, plumed_safeptr, plumed_safeptr_x
- flexbin_ : PLMD::bias::MetaD, PLMD::bias::PBMetaD
- flog : PLMD::logmfd::LogMFD
- flying_ : PLMD::bias::MetaD
- fmass : PLMD::piv::PIV
- fmin : PLMD::Minimise1DBrent< FCLASS >
- fmt : PLMD::bias::MaxEnt, PLMD::contour::DumpContour, PLMD::function::FuncSumHills, PLMD::generic::Committor, PLMD::generic::DumpDerivatives, PLMD::generic::DumpForces, PLMD::generic::DumpPDB, PLMD::generic::DumpProjections, PLMD::generic::DumpVector, PLMD::generic::EffectiveEnergyDrift, PLMD::generic::Print, PLMD::gridtools::DumpGrid, PLMD::molfile::md_file
- fmt_ : PLMD::bias::MetaD, PLMD::bias::PBMetaD, PLMD::eds::EDS, PLMD::fisst::FISST, PLMD::GridBase, PLMD::isdb::MetainferenceBase
- fmt_gro_box : PLMD::generic::DumpAtoms
- fmt_gro_pos : PLMD::generic::DumpAtoms
- fmt_xyz : PLMD::generic::DumpAtoms
- force : PLMD::ForceInput
- force_ : PLMD::maze::OptimizerBias
- force_normalization_ : PLMD::ves::TargetDistribution
- force_stash : PLMD::colvar::RMSDVector
- force_weight_ : PLMD::fisst::FISST
- forced_unique : PLMD::DomainDecomposition
- forceOnEnergy : PLMD::ActionAtomistic
- forceOnExtraCV : PLMD::ActionAtomistic
- forces : PLMD::ActionAtomistic, PLMD::bias::Bias, PLMD::generic::EffectiveEnergyDrift, PLMD::generic::Plumed, PLMD::isdb::EMMI, PLMD::isdb::MetainferenceBase
- forces_ : PLMD::fisst::FISST
- forces_to_scale : PLMD::colvar::Energy
- forcesForApply : PLMD::ActionWithValue
- forcesToApply : PLMD::clusters::ClusterWeights, PLMD::contour::DistanceFromContourBase, PLMD::isdb::EMMI, PLMD::isdb::MetainferenceBase
- foreignDeltaBias : PLMD::GREX
- found : PLMD::TokenizedLine::presentAndFound
- fourier_params : PLMD::fourier::FourierTransform
- fp : PLMD::FileBase, PLMD::xdrfile::XDRFILE
- fpc : PLMD::Subprocess
- fpcp : PLMD::Subprocess
- fppc : PLMD::Subprocess
- fractional : PLMD::vatom::ArgsToVatom
- freq_adaptive_ : PLMD::bias::MetaD
- friction : PLMD::bias::ExtendedLagrangian
- from_domains : PLMD::ActionToPutData
- fshift : PLMD::matrixtools::MatrixTimesVectorData
- ftilde_ : PLMD::isdb::Metainference, PLMD::isdb::MetainferenceBase
- full : PLMD::metatomic::vesin::VesinOptions
- fullatomlist_ : PLMD::NeighborList
- fulldata : PLMD::volumes::VolumeOutput
- fullList : PLMD::DomainDecomposition
- fullPath : PLMD::ActionOptions, PLMD::RegisterBase< Content >::ContentAndFullPath
- func : PLMD::F1dim< FCLASS >, PLMD::function::Custom
- funcinput : PLMD::matrixtools::MatrixTimesMatrixInput< T >, PLMD::matrixtools::OuterProductInput< T >
- funcname : PLMD::GridBase
- funcstr : PLMD::symfunc::ThreeBodyGFunctionsInput
- function : PLMD::contour::ContourFindingObject< T >, PLMD::function::Custom, PLMD::gridtools::EvaluateGridFunction, PLMD::gridtools::FindGridOptimum, PLMD::gridtools::MarginalInput, PLMD::lepton::Operation::Custom, PLMD::matrixtools::OutputProductFunc, PLMD::switchContainers::SwitchInterface_lepton, PLMD::SwitchingFunction
- functions : PLMD::symfunc::ThreeBodyGFunctionsInput, plumed_symbol_table_type_x
- funit : PLMD::ActionToPutData, PLMD::DataPassingObject
- Fvol : PLMD::piv::PIV