COMMITTOR
 This is part of the analysis module

Does a committor analysis.

Examples

The following input monitors two torsional angles during a simulation, defines two basins (A and B) as a function of the two torsion angles and stops the simulation when it falls in one of the two. In the log file will be shown the latest values for the CVs and the basin reached.

Click on the labels of the actions for more information on what each action computes
r1: TORSION ATOMSthe four atoms involved in the torsional angle =1,2,3,4
r2: TORSION ATOMSthe four atoms involved in the torsional angle =2,3,4,5
COMMITTOR ...
ARGthe input for this action is the scalar output from one or more other actions. =r1,r2
STRIDEcompulsory keyword ( default=1 )
the frequency with which the CVs are analyzed =10
BASIN_LL1compulsory keyword
List of lower limits for basin # You can use multiple instances of this keyword i.e.
=0.15,0.20
BASIN_UL1compulsory keyword
List of upper limits for basin # You can use multiple instances of this keyword i.e.
=0.25,0.40
BASIN_LL2compulsory keyword
List of lower limits for basin # You can use multiple instances of this keyword i.e.
=-0.25,-0.40
BASIN_UL2compulsory keyword
List of upper limits for basin # You can use multiple instances of this keyword i.e.
=-0.15,-0.20
...

Glossary of keywords and components
Compulsory keywords
 BASIN_LL List of lower limits for basin # You can use multiple instances of this keyword i.e. BASIN_LL1, BASIN_LL2, BASIN_LL3... BASIN_UL List of upper limits for basin # You can use multiple instances of this keyword i.e. BASIN_UL1, BASIN_UL2, BASIN_UL3... STRIDE ( default=1 ) the frequency with which the CVs are analyzed
Options
 NOSTOP ( default=off ) if true do not stop the simulation when reaching a basin but just keep track of it ARG the input for this action is the scalar output from one or more other actions. The particular scalars that you will use are referenced using the label of the action. If the label appears on its own then it is assumed that the Action calculates a single scalar value. The value of this scalar is thus used as the input to this new action. If * or *.* appears the scalars calculated by all the proceeding actions in the input file are taken. Some actions have multi-component outputs and each component of the output has a specific label. For example a DISTANCE action labelled dist may have three components x, y and z. To take just the x component you should use dist.x, if you wish to take all three components then use dist.*.More information on the referencing of Actions can be found in the section of the manual on the PLUMED Getting Started. Scalar values can also be referenced using POSIX regular expressions as detailed in the section on Regular Expressions. To use this feature you you must compile PLUMED with the appropriate flag. You can use multiple instances of this keyword i.e. ARG1, ARG2, ARG3... FILE the name of the file on which to output the reached basin FMT the format that should be used to output real numbers