Inheritance diagram for PLMD::analysis::CopyAllFrames:

Public Member Functions
	CopyAllFrames (const LandmarkSelectionOptions &lo)

void	select (MultiReferenceBase *)

void	checkRead () const
	Check everything was read in. More...

std::string	description ()
	Return a description of the landmark selection protocol. More...

virtual std::string	rest_of_description ()
	Overwrite this to have a more descriptive output. More...

void	selectLandmarks (MultiReferenceBase *)
	Actually do landmark selection. More...

Protected Member Functions
unsigned	getNumberOfLandmarks () const
	Return the numbe of landmarks. More...

Communicator &	getCommunicator ()
	Return the communicator. More...

template<class T >
void	parse (const std::string &, T &)
	Read a keywords from the input. More...

void	parseFlag (const std::string &key, bool &t)
	Read a flag from the input. More...

unsigned	getNumberOfFrames () const
	Get the number of frames in the underlying action. More...

double	getWeightOfFrame (const unsigned &)
	Get the weight of the ith frame. More...

double	getDistanceBetweenFrames (const unsigned &, const unsigned &)
	Calculate the distance between the ith and jth frames. More...

void	selectFrame (const unsigned &, MultiReferenceBase *)
	Transfer frame i in the underlying action to the object we are going to analyze. More...

Constructor & Destructor Documentation

PLMD::analysis::CopyAllFrames::CopyAllFrames ( const LandmarkSelectionOptions & lo )

explicit

Member Function Documentation

void PLMD::analysis::LandmarkSelectionBase::checkRead ( ) const

inherited

Check everything was read in.

std::string PLMD::analysis::LandmarkSelectionBase::description ( )

inherited

Return a description of the landmark selection protocol.

Communicator & PLMD::analysis::LandmarkSelectionBase::getCommunicator ( )

inlineprotectedinherited

Return the communicator.

double PLMD::analysis::LandmarkSelectionBase::getDistanceBetweenFrames	(	const unsigned &	iframe,
		const unsigned &	jframe
	)

protectedinherited

Calculate the distance between the ith and jth frames.

unsigned PLMD::analysis::LandmarkSelectionBase::getNumberOfFrames ( ) const

inlineprotectedinherited

Get the number of frames in the underlying action.

unsigned PLMD::analysis::LandmarkSelectionBase::getNumberOfLandmarks ( ) const

inlineprotectedinherited

Return the numbe of landmarks.

double PLMD::analysis::LandmarkSelectionBase::getWeightOfFrame ( const unsigned & iframe )

protectedinherited

Get the weight of the ith frame.

template<class T >

void PLMD::analysis::LandmarkSelectionBase::parse	(	const std::string &	key,
		T &	t
	)

protectedinherited

Read a keywords from the input.

void PLMD::analysis::LandmarkSelectionBase::parseFlag	(	const std::string &	key,
		bool &	t
	)

protectedinherited

Read a flag from the input.

virtual std::string PLMD::analysis::LandmarkSelectionBase::rest_of_description ( )

inlinevirtualinherited

Overwrite this to have a more descriptive output.

void PLMD::analysis::CopyAllFrames::select ( MultiReferenceBase * myframes )

virtual

Implements PLMD::analysis::LandmarkSelectionBase.

void PLMD::analysis::LandmarkSelectionBase::selectFrame	(	const unsigned &	iframe,
		MultiReferenceBase *	myframes
	)

protectedinherited

Transfer frame i in the underlying action to the object we are going to analyze.

void PLMD::analysis::LandmarkSelectionBase::selectLandmarks ( MultiReferenceBase * myframes )

inherited

Actually do landmark selection.

The documentation for this class was generated from the following file:

analysis/SelectAllFrames.cpp

Public Member Functions

Protected Member Functions

Constructor & Destructor Documentation

Member Function Documentation