Class for input files. More...

#include <IFile.h>

Inheritance diagram for PLMD::IFile:

Classes
class	Field

Public Member Functions
	IFile ()
	Constructor. More...

	~IFile ()
	Destructor. More...

IFile &	open (const std::string &name)
	Opens the file. More...

IFile &	scanFieldList (std::vector< std::string > &)
	Gets the list of all fields. More...

IFile &	scanField (const std::string &, double &)
	Read a double field. More...

IFile &	scanField (const std::string &, int &)
	Read a int field. More...

IFile &	scanField (const std::string &, std::string &)
	Read a string field. More...

IFile &	scanField ()
	Ends a field-formatted line. More...

IFile &	getline (std::string &)
	Get a full line as a string. More...

void	reset (bool)
	Reset end of file. More...

bool	FieldExist (const std::string &s)
	Check if a field exist. More...

IFile &	scanField (Value *val)
	Read in a value. More...

void	allowIgnoredFields ()
	Allow some of the fields in the input to be ignored. More...

FileBase &	link (FILE *)
	Link to an already open filed. More...

FileBase &	link (PlumedMain &)
	Link to a PlumedMain object Automatically links also the corresponding Communicator. More...

FileBase &	link (Communicator &)
	Link to a Communicator object. More...

FileBase &	link (Action &)
	Link to an Action object. More...

virtual FileBase &	flush ()
	Flushes the file to disk. More...

void	close ()
	Closes the file Should be used only for explicitely opened files. More...

	operator bool () const
	Check for error/eof. More...

void	setHeavyFlush ()
	Set heavyFlush flag. More...

bool	FileExist (const std::string &path)
	Check if the file exists. More...

bool	isOpen ()
	Check if a file is open. More...

Static Public Member Functions
static void	test ()
	Runs a small testcase. More...

Static Protected Member Functions
static std::string	appendSuffix (const std::string &path, const std::string &suffix)
	Append suffix. More...

Protected Attributes
FILE *	fp
	file pointer More...

void *	gzfp
	zip file pointer. More...

Communicator *	comm
	communicator. NULL if not set More...

PlumedMain *	plumed
	pointer to main plumed object. NULL if not linked More...

Action *	action
	pointer to corresponding action. NULL if not linked More...

bool	cloned
	Control closing on destructor. More...

bool	eof
	Set to true when end of file is encountered. More...

bool	err
	Set to true when error is encountered. More...

std::string	path
	path of the opened file More...

bool	heavyFlush
	Set to true if you want flush to be heavy (close/reopen) More...

Private Member Functions
size_t	llread (char *, size_t)
	Low-level read. More...

IFile &	advanceField ()
	Advance to next field (= read one line) More...

unsigned	findField (const std::string &name) const
	Find field index by name. More...

Private Attributes
std::vector< Field >	fields
	All the defined fields. More...

bool	inMiddleOfField
	Flag set in the middle of a field reading. More...

bool	ignoreFields
	Set to true if you want to allow fields to be ignored in the read in file. More...

Detailed Description

Class for input files.

This class provides features similar to those in the standard C "FILE*" type, but only for sequential input. See OFile for sequential output.

Constructor & Destructor Documentation

PLMD::IFile::IFile ( )

Constructor.

PLMD::IFile::~IFile ( )

Destructor.

Member Function Documentation

IFile & PLMD::IFile::advanceField ( )

private

Advance to next field (= read one line)

void PLMD::IFile::allowIgnoredFields ( )

Allow some of the fields in the input to be ignored.

std::string PLMD::FileBase::appendSuffix	(	const std::string &	path,
		const std::string &	suffix
	)

staticprotectedinherited

Append suffix.

It appends the desired suffix to the string. Notice that it conserves a possible ".gz" suffix.

void PLMD::FileBase::close ( )

inherited

Closes the file Should be used only for explicitely opened files.

bool PLMD::IFile::FieldExist ( const std::string & s )

Check if a field exist.

bool PLMD::FileBase::FileExist ( const std::string & path )

inherited

Check if the file exists.

unsigned PLMD::IFile::findField ( const std::string & name ) const

private

Find field index by name.

FileBase & PLMD::FileBase::flush ( )

virtualinherited

Flushes the file to disk.

Reimplemented in PLMD::OFile.

IFile & PLMD::IFile::getline ( std::string & str )

Get a full line as a string.

bool PLMD::FileBase::isOpen ( )

inherited

Check if a file is open.

FileBase & PLMD::FileBase::link ( FILE * fp )

inherited

Link to an already open filed.

FileBase & PLMD::FileBase::link ( PlumedMain & plumed )

inherited

Link to a PlumedMain object Automatically links also the corresponding Communicator.

FileBase & PLMD::FileBase::link ( Communicator & comm )

inherited

Link to a Communicator object.

FileBase & PLMD::FileBase::link ( Action & action )

inherited

Link to an Action object.

Automatically links also the corresponding PlumedMain and Communicator.

size_t PLMD::IFile::llread	(	char *	ptr,
		size_t	s
	)

private

Low-level read.

Note: in parallel, all processes read

IFile & PLMD::IFile::open ( const std::string & name )

virtual

Opens the file.

Implements PLMD::FileBase.

PLMD::FileBase::operator bool ( ) const

inherited

Check for error/eof.

void PLMD::IFile::reset ( bool reset )

Reset end of file.

IFile & PLMD::IFile::scanField	(	const std::string &	name,
		double &	x
	)

Read a double field.

IFile & PLMD::IFile::scanField	(	const std::string &	name,
		int &	x
	)

Read a int field.

IFile & PLMD::IFile::scanField	(	const std::string &	name,
		std::string &	str
	)

Read a string field.

IFile & PLMD::IFile::scanField ( )

Ends a field-formatted line.

Typically used as

  if.scanField("a",a).scanField("b",b).scanField();

IFile & PLMD::IFile::scanField ( Value * val )

Read in a value.

IFile & PLMD::IFile::scanFieldList ( std::vector< std::string > & s )

Gets the list of all fields.

void PLMD::FileBase::setHeavyFlush ( )

inlineinherited

Set heavyFlush flag.

void PLMD::FileBase::test ( )

staticinherited

Runs a small testcase.

Member Data Documentation

Action* PLMD::FileBase::action

protectedinherited

pointer to corresponding action. NULL if not linked

bool PLMD::FileBase::cloned

protectedinherited

Control closing on destructor.

If true, file will not be closed in destructor

Communicator* PLMD::FileBase::comm

protectedinherited

communicator. NULL if not set

bool PLMD::FileBase::eof

protectedinherited

Set to true when end of file is encountered.

bool PLMD::FileBase::err

protectedinherited

Set to true when error is encountered.

std::vector<Field> PLMD::IFile::fields

private

All the defined fields.

FILE* PLMD::FileBase::fp

protectedinherited

file pointer

void* PLMD::FileBase::gzfp

protectedinherited

zip file pointer.

bool PLMD::FileBase::heavyFlush

protectedinherited

Set to true if you want flush to be heavy (close/reopen)

bool PLMD::IFile::ignoreFields

private

Set to true if you want to allow fields to be ignored in the read in file.

bool PLMD::IFile::inMiddleOfField

private

Flag set in the middle of a field reading.

std::string PLMD::FileBase::path

protectedinherited

path of the opened file

PlumedMain* PLMD::FileBase::plumed

protectedinherited

pointer to main plumed object. NULL if not linked

The documentation for this class was generated from the following files:

tools/IFile.h
tools/IFile.cpp

Classes

Public Member Functions

Static Public Member Functions

Static Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation