Classes providing input directives

Classes which implement directive that we used in the plumed input file. More...

Classes
class	PLMD::analysis::Histogram
	Provides the keyword HISTOGRAM More...
class	PLMD::bias::ABMD
	Provides the keyword ABMD More...
class	PLMD::bias::BiasValue
	Provides the keyword BIASVALUE More...
class	PLMD::bias::External
	Provides the keyword EXTERNAL More...
class	PLMD::bias::LWalls
	Provides the keyword LOWER_WALLS More...
class	PLMD::bias::MetaD
	Provides the keyword METAD More...
class	PLMD::bias::MovingRestraint
	Provides the keyword MOVINGRESTRAINT More...
class	PLMD::bias::Restraint
	Provides the keyword RESTRAINT More...
class	PLMD::bias::UWalls
	Provides the keyword UPPER_WALLS More...
class	PLMD::colvar::Angle
	Provides the keyword ANGLE More...
class	PLMD::colvar::Cell
	Provides the keyword CELL More...
class	PLMD::colvar::Constant
	Provides the keyword CONSTANT More...
class	PLMD::colvar::ContactMap
	Provides the keyword CONTACTMAP More...
class	PLMD::colvar::Coordination
	Provides the keyword COORDINATION More...
class	PLMD::CS2Backbone
	Provides the keyword CS2BACKBONE More...
class	PLMD::colvar::DHEnergy
	Provides the keyword DHENERGY More...
class	PLMD::colvar::Dipole
	Provides the keyword DIPOLE More...
class	PLMD::colvar::Distance
	Provides the keyword DISTANCE More...
class	PLMD::colvar::DRMSD
	Provides the keyword DRMSD More...
class	PLMD::colvar::Energy
	Provides the keyword ENERGY More...
class	PLMD::colvar::ColvarFake
	Provides the keyword FAKE More...
class	PLMD::colvar::Gyration
	Provides the keyword GYRATION More...
class	PLMD::colvar::PathMSD
	Provides the keyword PATHMSD More...
class	PLMD::colvar::PropertyMap
	Provides the keyword PROPERTYMAP More...
class	PLMD::colvar::RMSD
	Provides the keyword RMSD More...
class	PLMD::colvar::Template
	Provides the keyword TEMPLATE More...
class	PLMD::colvar::Torsion
	Provides the keyword TORSION More...
class	PLMD::colvar::Volume
	Provides the keyword VOLUME More...
class	PLMD::function::Combine
	Provides the keyword COMBINE More...
class	PLMD::function::FuncPathMSD
	Provides the keyword FUNCPATHMSD More...
class	PLMD::function::FuncSumHills
	Provides the keyword FUNCSUMHILLS More...
class	PLMD::function::Matheval
	Provides the keyword MATHEVAL More...
class	PLMD::function::Piecewise
	Provides the keyword PIECEWISE More...
class	PLMD::function::Sort
	Provides the keyword SORT More...
class	PLMD::function::Target
	Provides the keyword TARGET More...
class	PLMD::generic::Debug
	Provides the keyword DEBUG More...
class	PLMD::generic::DumpAtoms
	Provides the keyword DUMPATOMS More...
class	PLMD::generic::DumpDerivatives
	Provides the keyword DUMPDERIVATIVES More...
class	PLMD::generic::DumpForces
	Provides the keyword DUMPFORCES More...
class	PLMD::generic::DumpProjections
	Provides the keyword DUMPPROJECTIONS More...
class	PLMD::generic::Flush
	Provides the keyword FLUSH More...
class	PLMD::generic::Group
	Provides the keyword GROUP More...
class	PLMD::generic::Include
	Provides the keyword INCLUDE More...
class	PLMD::generic::Print
	Provides the keyword PRINT More...
class	PLMD::generic::RandomExchanges
	Provides the keyword RANDOM_EXCHANGES More...
class	PLMD::generic::Read
	Provides the keyword READ More...
class	PLMD::generic::Time
	Provides the keyword TIME More...
class	PLMD::generic::WholeMolecules
	Provides the keyword WHOLEMOLECULES More...
class	PLMD::IMD
	Provides the keyword IMD More...
class	PLMD::manyrestraints::Sphere
	Provides the keyword SPHERICAL_RESTRAINT More...
class	PLMD::multicolvar::AlphaBeta
	Provides the keyword ALPHABETA More...
class	PLMD::multicolvar::Angles
	Provides the keyword ANGLES More...
class	PLMD::multicolvar::Bridge
	Provides the keyword BRIDGE More...
class	PLMD::multicolvar::CoordinationNumbers
	Provides the keyword COORDINATIONNUMBER More...
class	PLMD::multicolvar::Density
	Provides the keyword DENSITY More...
class	PLMD::multicolvar::Distances
	Provides the keyword DISTANCES More...
class	PLMD::multicolvar::VolumeAround
	Provides the keyword AROUND More...
class	PLMD::secondarystructure::AlphaRMSD
	Provides the keyword ALPHARMSD More...
class	PLMD::secondarystructure::AntibetaRMSD
	Provides the keyword ANTIBETARMSD More...
class	PLMD::secondarystructure::ParabetaRMSD
	Provides the keyword PARABETARMSD More...
class	PLMD::setup::Load
	Provides the keyword LOAD More...
class	PLMD::setup::MolInfo
	Provides the keyword MOLINFO More...
class	PLMD::setup::Restart
	Provides the keyword RESTART More...
class	PLMD::setup::Units
	Provides the keyword UNITS More...
class	PLMD::vatom::Center
	Provides the keyword CENTER More...
class	PLMD::vatom::COM
	Provides the keyword COM More...
class	PLMD::vatom::Ghost
	Provides the keyword GHOST More...

Detailed Description

Classes which implement directive that we used in the plumed input file.

Most of these classes are only used to provide a new feature which will be available from the plumed input file. As such, they are typically not reused in other places of the code. For this reason, almost all of them are directly provided into an implementation file (.cpp), and have no accociated header file (.h). A notable exceptions is PLMD::SetupMolInfo, which needs to be accessed directly from other classes.

Each of these classes provides one directive for the plumed input file. This list is built automatically based on the PLUMED_REGISTER_ACTION macro.