File List

Here is a list of all files with brief descriptions:

[detail level 123]

► analysis
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
Analysis.cpp
Analysis.h
Histogram.cpp
► bias
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
ABMD.cpp
ActionRegister.h
Bias.cpp
Bias.h
BiasValue.cpp
External.cpp
LWalls.cpp
MetaD.cpp
MovingRestraint.cpp
Restraint.cpp
UWalls.cpp
► cltools
► config
Config.h
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
► wrapper
Plumed.h
CLTool.h
CLToolRegister.h
Driver.cpp
DriverDouble.cpp
DriverFloat.cpp
GenTemplate.cpp
Info.cpp
Manual.cpp
SimpleMD.cpp
SumHills.cpp
► colvar
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
ActionRegister.h
Angle.cpp
Cell.cpp
Colvar.h
Constant.cpp
ContactMap.cpp
Coordination.cpp
CoordinationBase.cpp
CoordinationBase.h
CS2Backbone.cpp
DHEnergy.cpp
Dipole.cpp
Distance.cpp
DRMSD.cpp
Energy.cpp
Fake.cpp
Gyration.cpp
PathMSD.cpp
PathMSDBase.cpp
PathMSDBase.h
PropertyMap.cpp
RMSD.cpp
Template.cpp
Torsion.cpp
Volume.cpp
► config
Config.cpp
Config.h
ConfigInstall.cpp
version.h
► core
► config
Config.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
Action.cpp
Action.h
ActionAtomistic.cpp
ActionAtomistic.h
ActionPilot.cpp
ActionPilot.h
ActionRegister.cpp
ActionRegister.h
ActionSet.cpp
ActionSet.h
ActionSetup.cpp
ActionSetup.h
ActionWithArguments.cpp
ActionWithArguments.h
ActionWithValue.cpp
ActionWithValue.h
ActionWithVirtualAtom.cpp
ActionWithVirtualAtom.h
Atoms.cpp
Atoms.h
CLTool.cpp
CLTool.h
CLToolMain.cpp
CLToolMain.h
CLToolRegister.cpp
CLToolRegister.h
Colvar.cpp
Colvar.h
ExchangePatterns.cpp
ExchangePatterns.h
FlexibleBin.cpp
FlexibleBin.h
GREX.cpp
GREX.h
MDAtoms.cpp
MDAtoms.h
PlumedMain.cpp
PlumedMain.h
PlumedMainInitializer.cpp
SetupMolInfo.cpp
SetupMolInfo.h
TargetDist.cpp
TargetDist.h
Value.cpp
Value.h
WithCmd.h
► function
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
ActionRegister.h
Combine.cpp
FuncPathMSD.cpp
FuncSumHills.cpp
Function.cpp
Function.h
Matheval.cpp
Piecewise.cpp
Sort.cpp
Target.cpp
► generic
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
Debug.cpp
DumpAtoms.cpp
DumpDerivatives.cpp
DumpForces.cpp
DumpProjections.cpp
Flush.cpp
Group.cpp
Include.cpp
Print.cpp
RandomExchanges.cpp
Read.cpp
Time.cpp
WholeMolecules.cpp
► imd
ActionIMD.cpp
► main
► wrapper
Plumed.h
main.cpp
► manyrestraints
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
► vesselbase
ActionWithVessel.h
BridgeVessel.h
FunctionVessel.h
ShortcutVessel.h
Vessel.h
VesselRegister.h
ManyRestraintsBase.cpp
ManyRestraintsBase.h
Sphere.cpp
► multicolvar
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
► vesselbase
ActionWithVessel.h
BridgeVessel.h
FunctionVessel.h
ShortcutVessel.h
Vessel.h
VesselRegister.h
ActionVolume.cpp
ActionVolume.h
AlphaBeta.cpp
Angles.cpp
Bridge.cpp
CoordinationNumbers.cpp
Density.cpp
DHEnergy.cpp
Distances.cpp
Moments.cpp
MultiColvar.cpp
MultiColvar.h
MultiColvarBase.cpp
MultiColvarBase.h
MultiColvarFunction.cpp
MultiColvarFunction.h
StoreCentralAtomsVessel.cpp
StoreCentralAtomsVessel.h
StoreColvarVessel.cpp
StoreColvarVessel.h
VolumeAround.cpp
► secondarystructure
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
► vesselbase
ActionWithVessel.h
BridgeVessel.h
FunctionVessel.h
ShortcutVessel.h
Vessel.h
VesselRegister.h
AlphaRMSD.cpp
AntibetaRMSD.cpp
ParabetaRMSD.cpp
SecondaryStructureRMSD.cpp
SecondaryStructureRMSD.h
► setup
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
ActionSetup.h
Load.cpp
MolInfo.cpp
Restart.cpp
Units.cpp
► tools
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
Angle.cpp
Angle.h
AtomNumber.h
BiasRepresentation.cpp
BiasRepresentation.h
Citations.cpp
Citations.h
Communicator.cpp
Communicator.h
CubicInterpolation.cpp
CubicInterpolation.h
DLLoader.cpp
DLLoader.h
DRMSD.cpp
DRMSD.h
DynamicList.h
Exception.cpp
Exception.h
File.h
FileBase.cpp
FileBase.h
Grid.cpp
Grid.h
HistogramBead.cpp
HistogramBead.h
IFile.cpp
IFile.h
Kearsley.cpp
Kearsley.h
KernelFunctions.cpp
KernelFunctions.h
Keywords.cpp
Keywords.h
LatticeReduction.cpp
LatticeReduction.h
Log.cpp
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.cpp
NeighborList.h
OFile.cpp
OFile.h
OptimalAlignment.cpp
OptimalAlignment.h
Pbc.cpp
Pbc.h
PDB.cpp
PDB.h
Random.cpp
Random.h
RMSD.cpp
RMSD.h
Stopwatch.cpp
Stopwatch.h
SwitchingFunction.cpp
SwitchingFunction.h
Tensor.cpp
Tensor.h
Tools.cpp
Tools.h
Torsion.cpp
Torsion.h
Units.cpp
Units.h
Vector.cpp
Vector.h
► vatom
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
ActionRegister.h
ActionWithVirtualAtom.h
Center.cpp
COM.cpp
Ghost.cpp
► vesselbase
► core
Action.h
ActionAtomistic.h
ActionPilot.h
ActionRegister.h
ActionSet.h
ActionSetup.h
ActionWithArguments.h
ActionWithValue.h
ActionWithVirtualAtom.h
Atoms.h
CLTool.h
CLToolMain.h
CLToolRegister.h
Colvar.h
ExchangePatterns.h
FlexibleBin.h
GREX.h
MDAtoms.h
PlumedMain.h
SetupMolInfo.h
TargetDist.h
Value.h
WithCmd.h
► tools
Angle.h
AtomNumber.h
BiasRepresentation.h
Citations.h
Communicator.h
CubicInterpolation.h
DLLoader.h
DRMSD.h
DynamicList.h
Exception.h
File.h
FileBase.h
Grid.h
HistogramBead.h
IFile.h
Kearsley.h
KernelFunctions.h
Keywords.h
LatticeReduction.h
Log.h
Matrix.h
MatrixSquareBracketsAccess.h
NeighborList.h
OFile.h
OptimalAlignment.h
Pbc.h
PDB.h
Random.h
RMSD.h
Stopwatch.h
SwitchingFunction.h
Tensor.h
Tools.h
Torsion.h
Units.h
Vector.h
ActionWithVessel.cpp
ActionWithVessel.h
Between.cpp
BridgeVessel.cpp
BridgeVessel.h
FunctionVessel.cpp
FunctionVessel.h
Histogram.cpp
LessThan.cpp
Mean.cpp
Min.cpp
MoreThan.cpp
ShortcutVessel.cpp
ShortcutVessel.h
Sum.cpp
Vessel.cpp
Vessel.h
VesselRegister.cpp
VesselRegister.h
► wrapper
Plumed.c
Plumed.h
PlumedStatic.cpp