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PLMD::PDB Member List

This is the complete list of members for PLMD::PDB, including all inherited members.

atomsymbPLMD::PDBprivate
betaPLMD::PDBprivate
chainPLMD::PDBprivate
getAtomName(AtomNumber a) const PLMD::PDB
getAtomNumbers() const PLMD::PDB
getAtomRange(const std::string &chainname, AtomNumber &a_start, AtomNumber &a_end, std::string &errmsg) const PLMD::PDB
getBackbone(const unsigned &resnumber, const std::vector< std::string > &backnames, std::vector< AtomNumber > &backnumbers) const PLMD::PDB
getBeta() const PLMD::PDB
getChainID(const unsigned &resnumber) const PLMD::PDB
getChainNames(std::vector< std::string > &chains) const PLMD::PDB
getOccupancy() const PLMD::PDB
getPositions() const PLMD::PDB
getRemark() const PLMD::PDB
getResidueName(AtomNumber a) const PLMD::PDB
getResidueNumber(AtomNumber a) const PLMD::PDB
getResidueRange(const std::string &chainname, unsigned &res_start, unsigned &res_end, std::string &errmsg) const PLMD::PDB
number2indexPLMD::PDBprivate
numbersPLMD::PDBprivate
occupancyPLMD::PDBprivate
operator<<(Log &ostr, const PDB &pdb)PLMD::PDBfriend
positionsPLMD::PDBprivate
read(const std::string &file, bool naturalUnits, double scale)PLMD::PDB
readFromFilepointer(FILE *fp, bool naturalUnits, double scale)PLMD::PDB
remarkPLMD::PDBprivate
renameAtoms(const std::string &old_name, const std::string &new_name)PLMD::PDB
residuePLMD::PDBprivate
residuenamesPLMD::PDBprivate
setArgKeyword(const std::string &new_args)PLMD::PDB
size() const PLMD::PDB