Main Page
Related Pages
Modules
Namespaces
Classes
Files
Class List
Class Index
Class Hierarchy
Class Members
All
Classes
Namespaces
Files
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Macros
Modules
Pages
Class Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
ExchangePatterns
(
PLMD
)
PathMSD
(
PLMD::colvar
)
External
(
PLMD::bias
)
PathMSDBase
(
PLMD::colvar
)
ABMD
(
PLMD::bias
)
F
Pbc
(
PLMD
)
Action
(
PLMD
)
PDB
(
PLMD
)
ActionAtomistic
(
PLMD
)
IFile::Field
(
PLMD
)
Piecewise
(
PLMD::function
)
ActionOptions
(
PLMD
)
OFile::Field
(
PLMD
)
Plumed
(
PLMD
)
ActionPilot
(
PLMD
)
FileBase::FieldBase
(
PLMD
)
PlumedMain
(
PLMD
)
ActionRegister
(
PLMD
)
FileBase
(
PLMD
)
PlumedMainInitializer
(
PLMD
)
ActionSet
(
PLMD
)
FilesHandler
(
PLMD::function
)
Print
(
PLMD::generic
)
ActionSetup
(
PLMD
)
FlexibleBin
(
PLMD
)
ProbWeight
(
PLMD
)
ActionVolume
(
PLMD::multicolvar
)
Flush
(
PLMD::generic
)
PropertyMap
(
PLMD::colvar
)
ActionWithArguments
(
PLMD
)
FuncPathMSD
(
PLMD::function
)
R
ActionWithValue
(
PLMD
)
FuncSumHills
(
PLMD::function
)
ActionWithVessel
(
PLMD::vesselbase
)
Function
(
PLMD::function
)
Random
(
PLMD
)
ActionWithVirtualAtom
(
PLMD
)
FunctionVessel
(
PLMD::vesselbase
)
RandomExchanges
(
PLMD::generic
)
AlphaBeta
(
PLMD::multicolvar
)
G
Read
(
PLMD::generic
)
AlphaRMSD
(
PLMD::secondarystructure
)
Communicator::Request
(
PLMD
)
Analysis
(
PLMD::analysis
)
MetaD::Gaussian
(
PLMD::bias
)
Restart
(
PLMD::setup
)
Angle
(
PLMD
)
GenTemplate
(
PLMD::cltools
)
Restraint
(
PLMD::bias
)
Angle
(
PLMD::colvar
)
Ghost
(
PLMD::vatom
)
RMSD
(
PLMD::colvar
)
Angles
(
PLMD::multicolvar
)
GREX
(
PLMD
)
RMSD
(
PLMD
)
AntibetaRMSD
(
PLMD::secondarystructure
)
Grid
(
PLMD
)
MatrixSquareBracketsAccess::Row
(
PLMD
)
AtomNumber
(
PLMD
)
Group
(
PLMD::generic
)
S
Atoms
(
PLMD
)
Gyration
(
PLMD::colvar
)
B
H
SecondaryStructureRMSD
(
PLMD::secondarystructure
)
SetupMolInfo
(
PLMD
)
Between
(
PLMD::vesselbase
)
Histogram
(
PLMD::analysis
)
ShortcutVessel
(
PLMD::vesselbase
)
Bias
(
PLMD::bias
)
Histogram
(
PLMD::vesselbase
)
SimpleMD
(
PLMD::cltools
)
BiasRepresentation
(
PLMD
)
HistogramBead
(
PLMD
)
Sort
(
PLMD::function
)
BiasValue
(
PLMD::bias
)
I
SparseGrid
(
PLMD
)
BiasWeight
(
PLMD
)
Sphere
(
PLMD::manyrestraints
)
Bridge
(
PLMD::multicolvar
)
IFile
(
PLMD
)
Communicator::Status
(
PLMD
)
BridgeVessel
(
PLMD::vesselbase
)
PathMSDBase::ImagePath
(
PLMD::colvar
)
Stopwatch
(
PLMD
)
C
IMD
(
PLMD
)
StoreCentralAtomsVessel
(
PLMD::multicolvar
)
Include
(
PLMD::generic
)
StoreColvarVessel
(
PLMD::multicolvar
)
Cell
(
PLMD::colvar
)
Info
(
PLMD::cltools
)
Sum
(
PLMD::vesselbase
)
Center
(
PLMD::vatom
)
InterpolateBicubic
(
PLMD
)
SwitchingFunction
(
PLMD
)
CInterpolation
(
PLMD
)
InterpolateCubic
(
PLMD
)
T
Citations
(
PLMD
)
K
CLTool
(
PLMD
)
Target
(
PLMD::function
)
CLToolMain
(
PLMD
)
Kearsley
(
PLMD
)
TargetDist
(
PLMD
)
CLToolOptions
(
PLMD
)
KernelFunctions
(
PLMD
)
Template
(
PLMD::colvar
)
CLToolRegister
(
PLMD
)
Keywords::KeyType
(
PLMD
)
TensorChecks
(
PLMD
)
CLToolSumHills
(
PLMD::cltools
)
Keywords
(
PLMD
)
TensorGeneric
(
PLMD
)
Colvar
(
PLMD
)
L
Stopwatch::Time
(
PLMD
)
ColvarFake
(
PLMD::colvar
)
Time
(
PLMD::generic
)
COM
(
PLMD::vatom
)
LatticeReduction
(
PLMD
)
Tools
(
PLMD
)
Combine
(
PLMD::function
)
LessThan
(
PLMD::vesselbase
)
Torsion
(
PLMD::colvar
)
Communicator
(
PLMD
)
Load
(
PLMD::setup
)
Torsion
(
PLMD
)
MatrixSquareBracketsAccess::Const_row
(
PLMD
)
Log
(
PLMD
)
U
Constant
(
PLMD::colvar
)
LWalls
(
PLMD::bias
)
ContactMap
(
PLMD::colvar
)
M
Units
(
PLMD::setup
)
Coordination
(
PLMD::colvar
)
Units
(
PLMD
)
CoordinationBase
(
PLMD::colvar
)
Manual
(
PLMD::cltools
)
UWalls
(
PLMD::bias
)
CoordinationNumbers
(
PLMD::multicolvar
)
ManyRestraintsBase
(
PLMD::manyrestraints
)
V
CS2Backbone
(
PLMD
)
Matheval
(
PLMD::function
)
D
Matrix
(
PLMD
)
Value
(
PLMD
)
MatrixSquareBracketsAccess
(
PLMD
)
VectorChecks
(
PLMD
)
Debug
(
PLMD::generic
)
MDAtomsBase
(
PLMD
)
VectorGeneric
(
PLMD
)
Density
(
PLMD::multicolvar
)
MDAtomsTyped
(
PLMD
)
Vessel
(
PLMD::vesselbase
)
DHEnergy
(
PLMD::colvar
)
Mean
(
PLMD::vesselbase
)
VesselOptions
(
PLMD::vesselbase
)
DHEnergy
(
PLMD::multicolvar
)
MetaD
(
PLMD::bias
)
VesselRegister
(
PLMD::vesselbase
)
Dipole
(
PLMD::colvar
)
Min
(
PLMD::vesselbase
)
Volume
(
PLMD::colvar
)
Distance
(
PLMD::colvar
)
MolInfo
(
PLMD::setup
)
VolumeAround
(
PLMD::multicolvar
)
Distances
(
PLMD::multicolvar
)
Moments
(
PLMD::multicolvar
)
W
DLLoader
(
PLMD
)
MoreThan
(
PLMD::vesselbase
)
Atoms::DomainDecomposition
(
PLMD
)
MovingRestraint
(
PLMD::bias
)
Stopwatch::Watch
(
PLMD
)
Driver
(
PLMD::cltools
)
MPI_Comm
(
PLMD
)
WeightBase
(
PLMD
)
DRMSD
(
PLMD
)
MultiColvar
(
PLMD::multicolvar
)
WholeMolecules
(
PLMD::generic
)
DRMSD
(
PLMD::colvar
)
MultiColvarBase
(
PLMD::multicolvar
)
WithCmd
(
PLMD
)
DumpAtoms
(
PLMD::generic
)
MultiColvarFunction
(
PLMD::multicolvar
)
i
DumpDerivatives
(
PLMD::generic
)
N
DumpForces
(
PLMD::generic
)
PathMSDBase::imgOrderByDist
(
PLMD::colvar
)
DumpProjections
(
PLMD::generic
)
NeighborList
(
PLMD
)
PathMSDBase::imgOrderBySimilarity
(
PLMD::colvar
)
DynamicList
(
PLMD
)
O
o
E
OFile
(
PLMD
)
FuncPathMSD::ordering
(
PLMD::function
)
Energy
(
PLMD::colvar
)
OptimalAlignment
(
PLMD
)
p
Exception
(
PLMD
)
P
FuncPathMSD::pairordering
(
PLMD::function
)
ParabetaRMSD
(
PLMD::secondarystructure
)
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
Hosted by GitHub
1.8.8
1.8.8
