PLMD::analysis::Histogram Member List

This is the complete list of members for PLMD::analysis::Histogram, including all inherited members.

accumulate()	PLMD::analysis::Analysis
Action(const ActionOptions &)	PLMD::Action
ActionPilot(const ActionOptions &)	PLMD::ActionPilot
ActionWithArguments(const ActionOptions &)	PLMD::ActionWithArguments
activate()	PLMD::Action	virtual
addDependency(Action *)	PLMD::Action
addForcesOnArguments(const std::vector< double > &forces)	PLMD::ActionWithArguments
Analysis(const ActionOptions &)	PLMD::analysis::Analysis
apply()	PLMD::analysis::Analysis	inlinevirtual
bringBackInPbc(int i, double d1) const	PLMD::ActionWithArguments	inline
bw	PLMD::analysis::Histogram	private
calculate()	PLMD::analysis::Analysis	virtual
calculateFromPDB(const PDB &)	PLMD::Action
PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::Action	virtual
PLMD::ActionWithArguments::calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::ActionWithArguments	virtual
checkNeedsGradients() const	PLMD::Action	inlinevirtual
checkNumericalDerivatives() const	PLMD::Action	inlinevirtual
checkRead()	PLMD::Action
cite(const std::string &s)	PLMD::Action
clearDependencies()	PLMD::Action
clearOptions()	PLMD::Action	virtual
comm	PLMD::Action
deactivate()	PLMD::Action	inlinevirtual
Dependencies typedef	PLMD::Action
difference(int, double, double) const	PLMD::ActionWithArguments	inline
error(const std::string &msg) const	PLMD::Action
exit(int c=0)	PLMD::Action
expandArgKeywordInPDB(PDB &pdb)	PLMD::ActionWithArguments	protected
fclose(FILE *fp)	PLMD::Action
fflush()	PLMD::Action
files	PLMD::Action
files_iterator typedef	PLMD::Action
finalizeWeights(const bool &ignore_weights)	PLMD::analysis::Analysis	protected
fopen(const char *path, const char *mode)	PLMD::Action
gbin	PLMD::analysis::Histogram	private
getArgument(const unsigned n) const	PLMD::ActionWithArguments	inline
getArguments()	PLMD::analysis::Analysis	inlineprotected
getDataPoint(const unsigned &idata, std::vector< double > &point, double &weight) const	PLMD::analysis::Analysis	inlineprotected
getDependencies() const	PLMD::Action	inline
getDocumentation() const	PLMD::Action	virtual
getExchangeStep() const	PLMD::Action
getLabel() const	PLMD::Action	inline
getName() const	PLMD::Action	inline
getNormalization() const	PLMD::analysis::Analysis	protected
getNumberOfArguments() const	PLMD::analysis::Analysis	inlineprotected
getNumberOfDataPoints() const	PLMD::analysis::Analysis	inlineprotected
getOutputFormat() const	PLMD::analysis::Analysis	inlineprotected
getPeriodicityInformation(const unsigned &i, std::string &dmin, std::string &dmax)	PLMD::analysis::Analysis	protected
getPntrToArgument(const unsigned n)	PLMD::ActionWithArguments	inline
getProjection(unsigned i, unsigned j) const	PLMD::ActionWithArguments
getStep() const	PLMD::Action
getStride() const	PLMD::ActionPilot	protected
getTime() const	PLMD::Action
getTimeStep() const	PLMD::Action
gmax	PLMD::analysis::Histogram	private
gmin	PLMD::analysis::Histogram	private
gridfname	PLMD::analysis::Histogram	private
Histogram(const ActionOptions &ao)	PLMD::analysis::Histogram
interpretArgumentList(const std::vector< std::string > &c, std::vector< Value * > &arg)	PLMD::ActionWithArguments
isActive() const	PLMD::Action	inline
isOptionOn(const std::string &s) const	PLMD::Action	inline
kerneltype	PLMD::analysis::Histogram	private
keywords	PLMD::Action
PLMD::lockRequests()	PLMD::Action	inlinevirtual
PLMD::ActionWithArguments::lockRequests()	PLMD::ActionWithArguments	inlinevirtual
log	PLMD::Action
multi_sim_comm	PLMD::Action
onStep() const	PLMD::ActionPilot
parse(const std::string &key, T &t)	PLMD::Action
parseArgumentList(const std::string &key, std::vector< Value * > &args)	PLMD::ActionWithArguments
parseFlag(const std::string &key, bool &t)	PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)	PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)	PLMD::Action
parseOutputFile(const std::string &key, std::string &filename)	PLMD::analysis::Analysis	protected
parseVector(const std::string &key, std::vector< T > &t)	PLMD::Action
performAnalysis()	PLMD::analysis::Histogram	virtual
plumed	PLMD::Action
point	PLMD::analysis::Histogram	private
prepare()	PLMD::analysis::Analysis	virtual
readAtomsFromPDB(const PDB &)	PLMD::Action	inlinevirtual
registerKeywords(Keywords &keys)	PLMD::analysis::Histogram	static
requestArguments(const std::vector< Value * > &arg)	PLMD::ActionWithArguments
runAnalysis()	PLMD::analysis::Analysis
runFinalJobs()	PLMD::analysis::Analysis	virtual
setOption(const std::string &s)	PLMD::Action	virtual
PLMD::unlockRequests()	PLMD::Action	inlinevirtual
PLMD::ActionWithArguments::unlockRequests()	PLMD::ActionWithArguments	inlinevirtual
update()	PLMD::analysis::Analysis	virtual
usingMemory() const	PLMD::analysis::Analysis	inlineprotected
warning(const std::string &msg)	PLMD::Action
~Action()	PLMD::Action	virtual
~ActionWithArguments()	PLMD::ActionWithArguments	inlinevirtual
~Analysis()	PLMD::analysis::Analysis