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PLMD::vesselbase::ActionWithVessel Member List

This is the complete list of members for PLMD::vesselbase::ActionWithVessel, including all inherited members.

accumulateDerivative(const unsigned &ider, const double &df)PLMD::vesselbase::ActionWithVesselinlineprotected
Action(const ActionOptions &)PLMD::Action
ActionWithVessel(const ActionOptions &ao)PLMD::vesselbase::ActionWithVessel
activate()PLMD::Actionvirtual
addBridgingVessel(ActionWithVessel *tome)PLMD::vesselbase::ActionWithVesselprotected
addDependency(Action *)PLMD::Action
addElementDerivative(const unsigned &, const double &)PLMD::vesselbase::ActionWithVesselinline
addVessel(const std::string &name, const std::string &input, const int numlab=0, const std::string thislab="")PLMD::vesselbase::ActionWithVesselprotected
addVessel(Vessel *vv)PLMD::vesselbase::ActionWithVesselprotected
apply()=0PLMD::Actionpure virtual
applyBridgeForces(const std::vector< double > &bb)PLMD::vesselbase::ActionWithVesselinlinevirtual
bridgeVariablePLMD::vesselbase::ActionWithVesselprotected
BridgeVessel classPLMD::vesselbase::ActionWithVesselfriend
bufferPLMD::vesselbase::ActionWithVesselprivate
calculate()=0PLMD::Actionpure virtual
calculateAllVessels()PLMD::vesselbase::ActionWithVesselprotected
calculateFromPDB(const PDB &)PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::Actionvirtual
chainRuleForElementDerivatives(const unsigned &, const unsigned &, const double &, Vessel *)PLMD::vesselbase::ActionWithVessel
chainRuleForElementDerivatives(const unsigned &, const unsigned &, const unsigned &, const unsigned &, const double &, Vessel *)PLMD::vesselbase::ActionWithVessel
checkNeedsGradients() const PLMD::Actioninlinevirtual
checkNumericalDerivatives() const PLMD::Actioninlinevirtual
checkRead()PLMD::Action
cite(const std::string &s)PLMD::Action
clearAfterTask()PLMD::vesselbase::ActionWithVesselprotected
clearDependencies()PLMD::Action
clearDerivativesAfterTask(const unsigned &)PLMD::vesselbase::ActionWithVesselvirtual
clearOptions()PLMD::Actionvirtual
commPLMD::Action
contributorsAreUnlockedPLMD::vesselbase::ActionWithVesselprotected
currentPLMD::vesselbase::ActionWithVesselprotected
current_buffer_startPLMD::vesselbase::ActionWithVesselprivate
current_buffer_stridePLMD::vesselbase::ActionWithVesselprivate
deactivate()PLMD::Actioninlinevirtual
deactivate_task()PLMD::vesselbase::ActionWithVesselvirtual
Dependencies typedefPLMD::Action
derivativesPLMD::vesselbase::ActionWithVesselprivate
doJobsRequiredBeforeTaskList()PLMD::vesselbase::ActionWithVesselvirtual
error(const std::string &msg) const PLMD::Action
exit(int c=0)PLMD::Action
fclose(FILE *fp)PLMD::Action
fflush()PLMD::Action
filesPLMD::Action
files_iterator typedefPLMD::Action
finishComputations()PLMD::vesselbase::ActionWithVesselprotected
fopen(const char *path, const char *mode)PLMD::Action
functionsPLMD::vesselbase::ActionWithVesselprivate
FunctionVessel classPLMD::vesselbase::ActionWithVesselfriend
getDependencies() const PLMD::Actioninline
getDocumentation() const PLMD::Actionvirtual
getElementDerivative(const unsigned &) const PLMD::vesselbase::ActionWithVesselinline
getElementValue(const unsigned &ival) const PLMD::vesselbase::ActionWithVesselinline
getExchangeStep() const PLMD::Action
getForcesFromVessels(std::vector< double > &forcesToApply)PLMD::vesselbase::ActionWithVesselprotected
getLabel() const PLMD::Actioninline
getName() const PLMD::Actioninline
getNLTolerance() const PLMD::vesselbase::ActionWithVesselinlineprotected
getNumberOfDerivatives()=0PLMD::vesselbase::ActionWithVesselpure virtual
getNumberOfVessels() const PLMD::vesselbase::ActionWithVesselinlineprotected
getPntrToVessel(const unsigned &i)PLMD::vesselbase::ActionWithVesselinlineprotected
getStep() const PLMD::Action
getTime() const PLMD::Action
getTimeStep() const PLMD::Action
getTolerance() const PLMD::vesselbase::ActionWithVesselinlineprotected
getVessel(const std::string &name)PLMD::vesselbase::ActionWithVessel
isActive() const PLMD::Actioninline
isOptionOn(const std::string &s) const PLMD::Actioninline
isPeriodic()=0PLMD::vesselbase::ActionWithVesselpure virtual
keywordsPLMD::Action
lockContributors()PLMD::vesselbase::ActionWithVesselinlinevirtual
lockRequests()PLMD::Actioninlinevirtual
logPLMD::Action
mergeDerivatives(const unsigned &ider, const double &df)PLMD::vesselbase::ActionWithVesselvirtual
multi_sim_commPLMD::Action
nl_tolerancePLMD::vesselbase::ActionWithVesselprivate
parse(const std::string &key, T &t)PLMD::Action
parseFlag(const std::string &key, bool &t)PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)PLMD::Action
performTask(const unsigned &j)=0PLMD::vesselbase::ActionWithVesselpure virtual
plumedPLMD::Action
prepare()PLMD::Actionvirtual
readPLMD::vesselbase::ActionWithVesselprivate
readAtomsFromPDB(const PDB &)PLMD::Actioninlinevirtual
readVesselKeywords()PLMD::vesselbase::ActionWithVesselprotected
registerKeywords(Keywords &keys)PLMD::vesselbase::ActionWithVesselstatic
resizeFunctions()PLMD::vesselbase::ActionWithVesselprotected
retrieveDomain(std::string &min, std::string &max)PLMD::vesselbase::ActionWithVesselvirtual
runAllTasks()PLMD::vesselbase::ActionWithVesselprotected
runFinalJobs()PLMD::Actioninlinevirtual
serialPLMD::vesselbase::ActionWithVesselprivate
setElementDerivative(const unsigned &, const double &)PLMD::vesselbase::ActionWithVesselinlineprotected
setElementValue(const unsigned &, const double &)PLMD::vesselbase::ActionWithVesselinline
setOption(const std::string &s)PLMD::Actionvirtual
ShortcutVessel classPLMD::vesselbase::ActionWithVesselfriend
taskListPLMD::vesselbase::ActionWithVesselprotected
thisvalPLMD::vesselbase::ActionWithVesselprivate
thisval_wassetPLMD::vesselbase::ActionWithVesselprivate
tmpforcesPLMD::vesselbase::ActionWithVesselprivate
tolerancePLMD::vesselbase::ActionWithVesselprivate
unlockContributors()PLMD::vesselbase::ActionWithVesselinlinevirtual
unlockRequests()PLMD::Actioninlinevirtual
update()PLMD::Actioninlinevirtual
Vessel classPLMD::vesselbase::ActionWithVesselfriend
warning(const std::string &msg)PLMD::Action
weightHasDerivativesPLMD::vesselbase::ActionWithVesselprotected
~Action()PLMD::Actionvirtual
~ActionWithVessel()PLMD::vesselbase::ActionWithVessel
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